-
- Genes & Genomes
-
- Evolution & Phylogeny
-
- Database
-
- Software tool
SwissOrthology
One-stop shop for orthologs
OrthoLoger
- Evolution & Phylogeny
- Software tool
This software, used to delineate orthologs in OrthoDB, is freely available for standalone computations. It is based on pair-wise assessments of protein sequence homology between complete genomes and subsequent clustering. Orthologer includes an optional mode to perform hierarchical computation of orthology guided by a user-provided organism taxonomy.
You might also be interested in
-
- Evolution & Phylogeny
-
- Database
OrthoDB
Ortholog evolutionary and functional annotations-
-
- Evolution & Phylogeny
-
- Database
OrthoDB SPARQL endpoint
SPARQL access to the OrthoDB catalog of orthologs-
-
- Evolution & Phylogeny
-
- Database
-
- Software tool
OMA
Orthology inference among complete genomes-
-
- Evolution & Phylogeny
-
- Database
OMA SPARQL endpoint
SPARQL access to the OMA Orthology database-
-
- Genes & Genomes
-
- Proteins & Proteomes
-
- Structural Biology
-
- Database
ViralZone
Fact sheets about viruses linked to sequence databases-
-
- Proteins & Proteomes
-
- Database
UniProtKB/Swiss-Prot
Protein knowledgebase-
-
- Proteins & Proteomes
-
- Database
UniProtKB
Protein sequence database-
-
- Proteins & Proteomes
-
- Software tool
HAMAP-Scan
Scanning of protein sequences against HAMAP families-
-
- Proteins & Proteomes
-
- Database
-
- Software tool
HAMAP
UniProtKB family classification and annotation-
-
- Genomics
-
- Database
TASmania
Toxin-antitoxin database-
-
- Genomics
-
- Software tool
TASer
Search tool associated to TASmania-
-
- Proteins & Proteomes
-
- Database
UniProt SPARQL endpoint
SPARQL access to UniProt and related data-
-
- Proteins & Proteomes
-
- Database
HAMAP SPARQL endpoint
SPARQL access to the HAMAP annotation rules-
-
- Proteins & Proteomes
-
- Software tool
ScanProsite
Protein sequences against PROSITE-
-
- Glycomics
-
- Database
SugarBind
Pathogen Sugar-Binding Database-
-
- Genomics
-
- Population genetics
-
- Software tool
V-pipe
Viral genomics pipeline-
-
- Genes & Genomes
-
- Evolution & Phylogeny
-
- Software tool
BEAST2 - COVID-19 Monitoring
Epidemiological dynamics in real-time-
-
- Text mining & Machine learning
-
- Software tool
Computational Linguistics for COVID-19
Central hub in computational linguistics for COVID-19-
-
- Genomics
-
- Population genetics
-
- Software tool
V-pipe SARS-CoV-2
V-pipe pipeline for SARS-CoV-2 sequencing data-
-
- Text mining & Machine learning
-
- Software tool
COVTriage
Rank the COVID-19 literature according to COVoc ontology-
-
- Genes & Genomes
-
- Database
-
- Software tool
SPSP | Swiss Pathogen Surveillance Platform
A secure NGS One-health online platform-
-
- Genomics
-
- Evolution & Phylogeny
-
- Software tool
Nextclade
Clade assignment, mutation calling & QC for virus sequences-
-
- Genes & Genomes
-
- Evolution biology
-
- Software tool
BEAST2
Bayesian evolutionary analysis by sampling trees-
-
- Genes & Genomes
-
- Evolution biology
-
- Software tool
GenSpectrum
Real-time pathogen genomic sequence analysis-
-
- Proteins & Proteomes
-
- Glycomics
-
- Database
GlyConnect
Integrated data platform to study glycosylation-
-
- Genomics
-
- Evolution biology
-
- Software tool
Nextstrain
Impact of pathogen genome data on science and public health-
-
- Genomics
- , Transcriptomics
-
- Evolution biology
-
- Software tool
BUSCO
From QC to gene prediction and phylogenomics-
-
- Genes & Genomes
- , Genomics
- , Metagenomics
-
- Software tool
mVIRs
Prediction tool for inducible, bacteria-infecting viruses-
-
- Evolution & Phylogeny
-
- Software tool
raxmlGUI
raxmlGUI 2.0 is a graphical user interface to RAxML-
-
- Genomics
-
- Evolution biology
-
- Database
Selectome
Database of positive selection-
-
- Evolution & Phylogeny
-
- Database
Swiss-Trees
A collection of gold standard gene phylogenies-
-
- Evolution & Phylogeny
-
- Software tool
Phylo.io
A tool for visualising and comparing phylogenetic trees-