NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.;
"Complete sequence of Synechococcus sp. CC9902.";
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases.

Comments

FUNCTION: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (By similarity).
CATALYTIC ACTIVITY: Plastoquinol-1 + 2 oxidized plastocyanin = plastoquinone + 2 reduced plastocyanin.
COFACTOR: Binds 1 2Fe-2S cluster per subunit (By similarity).
SUBUNIT: The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, while the 4 small subunits are petG, petL, petM and petN. The complex functions as a dimer (By similarity).
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Single-pass membrane protein (By similarity). Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C-terminal domain is part of the other monomer (By similarity).
MISCELLANEOUS: The Rieske iron-sulfur protein is a high potential 2Fe-2S protein.
SIMILARITY: Contains 1 Rieske domain.

Copyright

Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.

Cross-references

Sequence databases

EMBL

CP000097; ABB26691.1; -; Genomic_DNA.

[EMBL / GenBank / DDBJ] [CoDingSequence]

RefSeq

YP_377735.1; -.

3D structure databases

SMR

Q3AWL7; 12-177.

ModBase

Q3AWL7.

Enzyme and pathway databases

BioCyc

SSP1131-1:SYNCC9902_1734-MON; -.

Ontologies

GO:0016021;	Cellular component: integral to membrane (inferred from electronic annotation from UniProtKB-KW).
GO:0042651;	Cellular component: thylakoid membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0045158;	Molecular function: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (inferred from electronic annotation from HAMAP).
GO:0005506;	Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0009496;	Molecular function: plastoquinol-plastocyanin reductase activity (inferred from electronic annotation from HAMAP).
GO:0022900;	Biological process: electron transport chain (inferred from electronic annotation from UniProtKB-KW).
GO:0015979;	Biological process: photosynthesis (inferred from electronic annotation from HAMAP).
GO:0006810;	Biological process: transport (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.

Family and domain databases

HAMAP

MF_01335; -; 1.
PBIL [Tree]

InterPro

IPR014909; Cyt_b6-F_Fe-S_su.
IPR014349; Rieske.
IPR005805; Rieske_C.
IPR005806; Rieske_reg.
IPR006311; Tat.
Graphical view of domain structure.

Gene3D

G3DSA:2.102.10.10; Rieske_reg; 1.

PANTHER

PTHR10134; Rieske; 1.

Pfam

PF08802; CytB6-F_Fe-S; 1.
PF00355; Rieske; 1.
Pfam graphical view of domain structure.

PRINTS

PR00162; RIESKE.

TIGRFAMs

TIGR01409; TAT_signal_seq; 1.

PROSITE

PS51296; RIESKE; 1.
PS51318; TAT; 1.
PROSITE graphical view of domain structure (profiles).

Genome annotation databases

GeneID

3742967; -.

GenomeReviews

CP000097_GR; Syncc9902_1734.

KEGG

sye:Syncc9902_1734; -.

Phylogenomic databases

HOGENOM

Q3AWL7; -.

Genome annotation databases

CMR

Q3AWL7; Syncc9902_1734.

Other

UniRef

View cluster of proteins with at least 50% / 90% / 100% identity.

Keywords

2Fe-2S; Complete proteome; Electron transport; Iron; Iron-sulfur; Membrane; Metal-binding; Oxidoreductase; Thylakoid; Transmembrane; Transport.

Features

Feature table viewer

Feature aligner

`Key`	`From To`	`Length`	`Description`	`FTId`
`CHAIN`	`1 178`	`178`	`Cytochrome b6-f complex iron-sulfur subunit.`	`PRO_0000298464`
`TRANSMEM`	`20 42`	`23`	`Potential.`
`DOMAIN`	`65 161`	`97`	`Rieske.`
`METAL`	`107 107`		`Iron-sulfur (2Fe-2S) (By similarity).`
`METAL`	`109 109`		`Iron-sulfur (2Fe-2S); via pros nitrogen (By similarity).`
`METAL`	`125 125`		`Iron-sulfur (2Fe-2S) (By similarity).`
`METAL`	`128 128`		`Iron-sulfur (2Fe-2S); via pros nitrogen (By similarity).`
`DISULFID`	`112 127`		`By similarity.`

Sequence information

Length: 178 AA [This is the length of the unprocessed precursor]

Molecular weight: 18737 Da [This is the MW of the unprocessed precursor]

CRC64: E00042B162FEEFD2 [This is a checksum on the sequence]

        10         20         30         40         50         60 
MTQIPSSDVP GMGRRQFMNL LTFGSVTGVA LGALYPVARY FIPPKAAGSG GGTTAKDELG 

        70         80         90        100        110        120 
NVVTATGWLS THPEGDRSLV QGLKGDPTYL IVEGADAIGS YGINAICTHL GCVVPWNSGA 

       130        140        150        160        170 
NKFMCPCHGS QYDATGKVVR GPAPLSLALA NVSVEDDNVF VSEWSETDFR TGDKPWWA

Q3AWL7 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
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	BLAST submission on ExPASy/SIB or at NCBI (USA)		Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
	ScanProsite, MotifScan		Submit a homology modeling request to SWISS-MODEL
	NPSA Sequence analysis tools