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UniProtKB/Swiss-Prot entry P0C0L1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name APX6_ORYSJ
Primary accession number P0C0L1
Secondary accession numbers None
Integrated into Swiss-Prot on October 25, 2005
Sequence was last modified on October 25, 2005 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 25)
Name and origin of the protein
Protein name Probable L-ascorbate peroxidase 6, chloroplastic [Precursor]
Synonyms EC 1.11.1.11
OsAPx06
Gene name
Name: APX6
OrderedLocusNames: Os12g0178100, LOC_Os12g07820
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1186/1741-7007-3-20; PubMed=16188032 [NCBI, ExPASy, EBI, Israel, Japan]
The rice chromosomes 11 and 12 sequencing consortia;
"The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.";
BMC Biol. 3:20-20(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
[3]
NOMENCLATURE.
DOI=10.1007/s00239-004-2666-z; PubMed=15599508 [NCBI, ExPASy, EBI, Israel, Japan]
Teixeira F.K., Menezes-Benavente L., Margis R., Margis-Pinheiro M.;
"Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome.";
J. Mol. Evol. 59:761-770(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL732376; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
AK061107; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
RefSeq NP_001066305.1; -.
UniGene Os.9266
3D structure databases
SMR P0C0L1; 36-309.
ModBase P0C0L1.
Organism-specific databases
Gramene P0C0L1; -.
Ontologies
GO
GO:0009507; Cellular component: chloroplast (inferred from electronic annotation from UniProtKB-KW).
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0020037; Molecular function: heme binding (inferred from electronic annotation from InterPro).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0016688; Molecular function: L-ascorbate peroxidase activity (inferred from electronic annotation from EC).
GO:0030955; Molecular function: potassium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0042744; Biological process: hydrogen peroxide catabolic process (inferred from electronic annotation from UniProtKB-KW).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR002207; Asc_perxdse.
IPR002016; Haem_peroxidase_pln/fun/bac.
Graphical view of domain structure.
Pfam PF00141; peroxidase; 1.
Pfam graphical view of domain structure.
PRINTS PR00459; ASPEROXIDASE.
PR00458; PEROXIDASE.
PROSITE PS00435; PEROXIDASE_1; 1.
PS00436; PEROXIDASE_2; FALSE_NEG.
PS50873; PEROXIDASE_4; 1.
PROSITE graphical view of domain structure (profiles).
Genome annotation databases
GeneID 4351663; -.
KEGG osa:4351663; -.
Other
ProtoNet P0C0L1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Calcium; Chloroplast; Heme; Hydrogen peroxide; Iron; Metal-binding; Oxidoreductase; Peroxidase; Plastid; Potassium; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    32  32     Chloroplast (Potential). 
CHAIN   33   309  277     Probable L-ascorbate peroxidase 6, chloroplastic. PRO_0000042656
ACT_SITE   69    69        Proton acceptor (By similarity). 
METAL   198   198        Iron (heme axial ligand) (By similarity). 
METAL   199   199        Potassium or calcium (By similarity). 
METAL   231   231        Potassium or calcium (By similarity). 
METAL   238   238        Potassium or calcium (By similarity). 
SITE   65    65  1     Transition state stabilizer (By similarity). 
Sequence information
Length: 309 AA [This is the length of the unprocessed precursor] Molecular weight: 33502 Da [This is the MW of the unprocessed precursor] CRC64: DB5600BC16FC0984 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAVVHRLLRR GLSAASPLPS LQELGRRPAS SSAAAAGDAA AELRGAREDV KQLLKSTSCH 

        70         80         90        100        110        120 
PILVRLGWHD AGTYDKNITE WPKCGGANGS LRFEIELKHA ANAGLVNALK LIQPIKDKHA 

       130        140        150        160        170        180 
GVTYADLFQL ASATAIEEAG GPKIPMIYGR VDVAAPEQCP PEGRLPAAGP PSPAEHLREV 

       190        200        210        220        230        240 
FYRMGLSDKE IVALSGAHTL GRSRPERSGW GKPETKYTKN GPGAPGGQSW TSQWLKFDNS 

       250        260        270        280        290        300 
YFKDIKERRD EDLLVLPTDA VLFEDSSFKI YAEKYAADQD AFFEDYAEAH AKLSNLGAKF 


DPPKGISLE 

P0C0L1 in FASTA format

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