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UniProtKB/Swiss-Prot entry P09832


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GLTD_ECOLI
Primary accession number P09832
Secondary accession number Q2M8Z9
Integrated into Swiss-Prot on July 1, 1989
Sequence was last modified on January 23, 2007 (Sequence version 3)
Annotations were last modified on    December 16, 2008 (Entry version 97)
Name and origin of the protein
Protein name Glutamate synthase [NADPH] small chain
Synonyms EC 1.4.1.13
Glutamate synthase subunit beta
GLTS beta chain
NADPH-GOGAT
Gene name
Name: gltD
Synonyms: aspB
OrderedLocusNames: b3213, JW3180
From
Escherichia coli (strain K12) [TaxID: 83333] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PARTIAL PROTEIN SEQUENCE.
STRAIN=K12;
DOI=10.1016/0378-1119(87)90207-1; PubMed=3326786 [NCBI, ExPASy, EBI, Israel, Japan]
Oliver G., Gosset G., Sanchez-Pescador R., Lozoya E., Ku L.M., Flores N., Becerril B., Valle F., Bolivar F.;
"Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12.";
Gene 60:1-11(1987).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
DOI=10.1126/science.277.5331.1453; PubMed=9278503 [NCBI, ExPASy, EBI, Israel, Japan]
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1474(1997).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
DOI=10.1038/msb4100049; PubMed=16738553 [NCBI, ExPASy, EBI, Israel, Japan]
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[4]
PROTEIN SEQUENCE OF 2-13.
STRAIN=K12 / EMG2;
DOI=10.1002/elps.1150180807; PubMed=9298646 [NCBI, ExPASy, EBI, Israel, Japan]
Link A.J., Robison K., Church G.M.;
"Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.";
Electrophoresis 18:1259-1313(1997).
[5]
PROTEIN SEQUENCE OF 2-5.
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
DOI=10.1006/jmbi.1998.1726; PubMed=9600841 [NCBI, ExPASy, EBI, Israel, Japan]
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.-C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F.;
"Protein identification with N and C-terminal sequence tags in proteome projects.";
J. Mol. Biol. 278:599-608(1998).
[6]
DISCUSSION OF SEQUENCE.
PubMed=2643092 [NCBI, ExPASy, EBI, Israel, Japan]
Gosset G., Merino E., Recillas F., Oliver G., Becerril B., Bolivar F.;
"Amino acid sequence analysis of the glutamate synthase enzyme from Escherichia coli K-12.";
Protein Seq. Data Anal. 2:9-16(1989).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M18747; AAA23905.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U18997; AAA58015.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U00096; AAC76245.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP009048; BAE77257.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR G65112; G65112.
RefSeq AP_003756.1; -.
NP_417680.1; -.
3D structure databases
HSSP Q28943; 1GTE. [HSSP ENTRY / PDB]
ModBase P09832.
Protein-protein interaction databases
DIP DIP:9803N; -.
IntAct P09832; 6.
Enzyme and pathway databases
BioCyc EcoCyc:GLUSYNSMALL-MON; -.
MetaCyc:GLUSYNSMALL-MON; -.
2D gel databases
SWISS-2DPAGE P09832; -.
ECO2DBASE F050.4; 6TH EDITION.
Organism-specific databases
EchoBASE EB0399; -.
EcoGene EG10404; gltD.
Ontologies
GO
GO:0051539; Molecular function: 4 iron, 4 sulfur cluster binding (inferred from electronic annotation from UniProtKB-KW).
GO:0009055; Molecular function: electron carrier activity (inferred from electronic annotation from InterPro).
GO:0050660; Molecular function: FAD binding (inferred from electronic annotation from InterPro).
GO:0004355; Molecular function: glutamate synthase (NADPH) activity (inferred from electronic annotation from EC).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0006537; Biological process: glutamate biosynthetic process (inferred from electronic annotation from InterPro).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR000759; Adrndx_reductase.
IPR013027; FAD_pyr_nucl-diS_OxRdtase.
IPR012285; Fum_reductase_C.
IPR006006; Glut_synth_sub2.
IPR001327; Pyr_OxRdtase_NAD_bd.
IPR000103; Pyridine_nuc-diS_OxRdtase_2.
Graphical view of domain structure.
Gene3D G3DSA:1.10.1060.10; Fum_reductase_C; 1.
Pfam PF00070; Pyr_redox; 2.
PF07992; Pyr_redox_2; 1.
Pfam graphical view of domain structure.
PRINTS PR00419; ADXRDTASE.
PR00368; FADPNR.
PR00469; PNDRDTASEII.
ProDom PD000139; FAD_pyr_redox; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR01318; gltD_gamma_fam; 1.
PROSITE PS51379; 4FE4S_FER_2; 1.
PROSITE graphical view of domain structure (profiles).
Genome annotation databases
GeneID 947723; -.
GenomeReviews AP009048_GR; JW3180.
U00096_GR; b3213.
KEGG ecj:JW3180; -.
eco:b3213; -.
Phylogenomic databases
HOGENOM P09832; -.
Genome annotation databases
CMR P09832; b3213.
Other
ProtoNet P09832.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
4Fe-4S; Amino-acid biosynthesis; Complete proteome; Direct protein sequencing; Glutamate biosynthesis; Iron; Iron-sulfur; Metal-binding; NADP; Oxidoreductase.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
INIT_MET   1     1        Removed. 
CHAIN   2   472  471     Glutamate synthase [NADPH] small chain. PRO_0000170800
DOMAIN   38    69  32     4Fe-4S ferredoxin-type. 
METAL   94    94        Iron-sulfur (4Fe-4S) (Potential). 
METAL   98    98        Iron-sulfur (4Fe-4S) (Potential). 
METAL   104   104        Iron-sulfur (4Fe-4S) (Potential). 
METAL   108   108        Iron-sulfur (4Fe-4S) (Potential). 
CONFLICT   38    51        GQAKAQADRCLSCG -> ARPKRRLTAACRAA (in Ref. 1). 
CONFLICT   123   123        E -> K (in Ref. 1; AAA23905). 
CONFLICT   174   174        V -> C (in Ref. 1; AAA23905). 
CONFLICT   257   270        VYAALPFLIANTKQ -> CTQRCRSSSPTPNS (in Ref. 1). 
CONFLICT   312   313        KH -> ND (in Ref. 1; AAA23905). 
CONFLICT   376   400        GRRRAEIVAGSEHIVPADAVIMAFG -> ASPRGDRCRFRTYRTGRCGDHGVW (in Ref. 1; AAA23905). 
Sequence information
Length: 472 AA [This is the length of the unprocessed precursor] Molecular weight: 52015 Da [This is the MW of the unprocessed precursor] CRC64: F188CE1086040433 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSQNVYQFID LQRVDPPKKP LKIRKIEFVE IYEPFSEGQA KAQADRCLSC GNPYCEWKCP 

        70         80         90        100        110        120 
VHNYIPNWLK LANEGRIFEA AELSHQTNTL PEVCGRVCPQ DRLCEGSCTL NDEFGAVTIG 

       130        140        150        160        170        180 
NIERYINDKA FEMGWRPDMS GVKQTGKKVA IIGAGPAGLA CADVLTRNGV KAVVFDRHPE 

       190        200        210        220        230        240 
IGGLLTFGIP AFKLEKEVMT RRREIFTGMG IEFKLNTEVG RDVQLDDLLS DYDAVFLGVG 

       250        260        270        280        290        300 
TYQSMRGGLE NEDADGVYAA LPFLIANTKQ LMGFGETRDE PFVSMEGKRV VVLGGGDTAM 

       310        320        330        340        350        360 
DCVRTSVRQG AKHVTCAYRR DEENMPGSRR EVKNAREEGV EFKFNVQPLG IEVNGNGKVS 

       370        380        390        400        410        420 
GVKMVRTEMG EPDAKGRRRA EIVAGSEHIV PADAVIMAFG FRPHNMEWLA KHSVELDSQG 

       430        440        450        460        470 
RIIAPEGSDN AFQTSNPKIF AGGDIVRGSD LVVTAIAEGR KAADGIMNWL EV 

P09832 in FASTA format

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