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UniProtKB/Swiss-Prot entry P09063


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DLDH1_PSEPU
Primary accession number P09063
Secondary accession numbers None
Integrated into Swiss-Prot on November 1, 1988
Sequence was last modified on November 1, 1988 (Sequence version 1)
Annotations were last modified on    December 16, 2008 (Entry version 97)
Name and origin of the protein
Protein name Dihydrolipoyl dehydrogenase
Synonyms EC 1.8.1.4
Dihydrolipoamide dehydrogenase
LPD-Val
E3 component of branched-chain alpha-keto acid dehydrogenase complex
Gene name
Name: lpdV
From
Pseudomonas putida [TaxID: 303] 
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=G2;
PubMed=3046941 [NCBI, ExPASy, EBI, Israel, Japan]
Burns G., Brown T., Hatter K., Sokatch J.R.;
"Comparison of the amino acid sequences of the transacylase components of branched chain oxoacid dehydrogenase of Pseudomonas putida, and the pyruvate and 2-oxoglutarate dehydrogenases of Escherichia coli.";
Eur. J. Biochem. 176:165-169(1988).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PARTIAL PROTEIN SEQUENCE.
STRAIN=G2;
PubMed=2917566 [NCBI, ExPASy, EBI, Israel, Japan]
Burns G., Brown T., Hatter K., Sokatch J.R.;
"Sequence analysis of the lpdV gene for lipoamide dehydrogenase of branched-chain-oxoacid dehydrogenase of Pseudomonas putida.";
Eur. J. Biochem. 179:61-69(1989).
[3]
X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) IN COMPLEX WITH NAD AND FAD, SUBUNIT, AND DISULFIDE BOND.
DOI=10.1002/prot.340130406; PubMed=1325638 [NCBI, ExPASy, EBI, Israel, Japan]
Mattevi A., Obmolova G., Sokatsch J.R., Betzel C., Hol W.G.J.;
"The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45-A resolution.";
Proteins 13:336-351(1992).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M57613; AAA65618.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S02139; DEPSLP.
3D structure databases
PDB
1LVL; X-ray; 2.45 A; A=2-459.[ExPASy / RCSB / EBI]
PDBsum 1LVL; -.
ModBase P09063.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from InterPro).
GO:0004148; Molecular function: dihydrolipoyl dehydrogenase activity (inferred from electronic annotation from InterPro).
GO:0050660; Molecular function: FAD binding (inferred from electronic annotation from InterPro).
GO:0045454; Biological process: cell redox homeostasis (inferred from electronic annotation from InterPro).
GO:0006096; Biological process: glycolysis (inferred from electronic annotation from UniProtKB-KW).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR013027; FAD_pyr_nucl-diS_OxRdtase.
IPR000815; Hg_reductase.
IPR006258; Lipoamide_DHase.
IPR001100; Pyr_nuc-diS_OxRdtase.
IPR004099; Pyr_nucl-diS_OxRdtase_dimer.
IPR012999; Pyr_OxRdtase_I_AS.
IPR001327; Pyr_OxRdtase_NAD_bd.
Graphical view of domain structure.
Gene3D G3DSA:3.30.390.30; Pyr_redox_dim; 1.
PANTHER PTHR22912:SF20; Lipoamide_DH; 1.
Pfam PF00070; Pyr_redox; 1.
PF07992; Pyr_redox_2; 1.
PF02852; Pyr_redox_dim; 1.
Pfam graphical view of domain structure.
PRINTS PR00368; FADPNR.
PR00945; HGRDTASE.
PR00411; PNDRDTASEI.
ProDom PD000139; FAD_pyr_redox; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR01350; lipoamide_DH; 1.
PROSITE PS00076; PYRIDINE_REDOX_1; 1.
Other
LinkHub P09063; -.
ProtoNet P09063.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cytoplasm; Direct protein sequencing; FAD; Flavoprotein; Glycolysis; NAD; Oxidoreductase; Redox-active center.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   459  459     Dihydrolipoyl dehydrogenase. PRO_0000068038
NP_BIND   36    44  9     FAD. 
NP_BIND   179   183  5     NAD. 
NP_BIND   264   267  4     NAD. 
ACT_SITE   438   438        Proton acceptor (By similarity). 
BINDING   53    53        FAD. 
BINDING   119   119        FAD; via amide nitrogen and carbonyl oxygen. 
BINDING   142   142        FAD; via carbonyl oxygen. 
BINDING   182   182        FAD. 
BINDING   202   202        NAD. 
BINDING   236   236        NAD; via amide nitrogen. 
BINDING   306   306        FAD; via amide nitrogen. 
BINDING   312   312        NAD; via carbonyl oxygen. 
BINDING   314   314        FAD; via amide nitrogen. 
DISULFID   44    49        Redox-active. 
STRAND   8    12  5      
HELIX   16    28  13      
STRAND   32    35  4      
HELIX   42    47  6      
HELIX   49    67  19      
STRAND   76    83  8      
HELIX   85   109  25      
STRAND   113   115  3      
STRAND   119   123  5      
STRAND   126   129  4      
STRAND   132   135  4      
STRAND   137   141  5      
STRAND   145   147  3      
HELIX   162   165  4      
STRAND   173   178  6      
HELIX   182   194  13      
STRAND   197   201  5      
STRAND   203   208  6      
HELIX   213   226  14      
STRAND   229   231  3      
STRAND   235   240  6      
STRAND   243   247  5      
STRAND   249   251  3      
STRAND   261   263  3      
STRAND   267   269  3      
STRAND   272   275  4      
HELIX   276   278  3      
STRAND   301   303  3      
HELIX   305   308  4      
HELIX   314   328  15      
STRAND   342   344  3      
STRAND   346   354  9      
HELIX   357   362  6      
STRAND   367   373  7      
HELIX   374   376  3      
HELIX   378   382  5      
STRAND   389   395  7      
TURN   396   398  3      
STRAND   400   408  9      
HELIX   411   413  3      
HELIX   414   424  11      
HELIX   428   432  5      
HELIX   443   452  10      
Sequence information
Length: 459 AA [This is the length of the unprocessed precursor] Molecular weight: 48159 Da [This is the MW of the unprocessed precursor] CRC64: 3D60A7DE167D0586 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MQQTIQTTLL IIGGGPGGYV AAIRAGQLGI PTVLVEGQAL GGTCLNIGCI PSKALIHVAE 

        70         80         90        100        110        120 
QFHQASRFTE PSPLGISVAS PRLDIGQSVA WKDGIVDRLT TGVAALLKKH GVKVVHGWAK 

       130        140        150        160        170        180 
VLDGKQVEVD GQRIQCEHLL LATGSSSVEL PMLPLGGPVI SSTEALAPKA LPQHLVVVGG 

       190        200        210        220        230        240 
GYIGLELGIA YRKLGAQVSV VEARERILPT YDSELTAPVA ESLKKLGIAL HLGHSVEGYE 

       250        260        270        280        290        300 
NGCLLANDGK GGQLRLEADR VLVAVGRRPR TKGFNLECLD LKMNGAAIAI DERCQTSMHN 

       310        320        330        340        350        360 
VWAIGDVAGE PMLAHRAMAQ GEMVAEIIAG KARRFEPAAI AAVCFTDPEV VVVGKTPEQA 

       370        380        390        400        410        420 
SQQGLDCIVA QFPFAANGRA MSLESKSGFV RVVARRDNHL ILGWQAVGVA VSELSTAFAQ 

       430        440        450 
SLEMGACLED VAGTIHAHPT LGEAVQEAAL RALGHALHI 

P09063 in FASTA format

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