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UniProtKB/Swiss-Prot entry P09061


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ODBB_PSEPU
Primary accession number P09061
Secondary accession numbers None
Integrated into Swiss-Prot on November 1, 1988
Sequence was last modified on November 1, 1988 (Sequence version 1)
Annotations were last modified on    December 16, 2008 (Entry version 64)
Name and origin of the protein
Protein name 2-oxoisovalerate dehydrogenase subunit beta
Synonyms EC 1.2.4.4
Branched-chain alpha-keto acid dehydrogenase E1 component beta chain
BCKDH E1-beta
Gene name
Name: bkdA2
From
Pseudomonas putida [TaxID: 303] 
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=G2;
PubMed=3416875 [NCBI, ExPASy, EBI, Israel, Japan]
Burns G., Brown T., Hatter K., Idriss J., Sokatch J.R.;
"Similarity of the E1 subunits of branched-chain-oxoacid dehydrogenase from Pseudomonas putida to the corresponding subunits of mammalian branched-chain-oxoacid and pyruvate dehydrogenases.";
Eur. J. Biochem. 176:311-317(1988).
[2]
X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS).
DOI=10.1038/11563; PubMed=10426958 [NCBI, ExPASy, EBI, Israel, Japan]
Aevarsson A., Seger K., Turley S., Sokatch J.R., Hol W.G.J.;
"Crystal structure of 2-oxoisovalerate and dehydrogenase and the architecture of 2-oxo acid dehydrogenase multienzyme complexes.";
Nat. Struct. Biol. 6:785-792(1999).
Comments
  • FUNCTION: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
  • CATALYTIC ACTIVITY: 3-methyl-2-oxobutanoate + [dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine = [dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylpropanoyl)dihydrolipoyllysine + CO2.
  • COFACTOR: Thiamine pyrophosphate.
  • SUBUNIT: Heterodimer of an alpha and a beta chain.
  • INTERACTION:
    P09060:bkdA1; NbExp=1; IntAct=EBI-1027848, EBI-1027855;
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M57613; AAA65616.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M57613; AAA65615.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S01318; DEPSEB.
3D structure databases
PDB
1QS0; X-ray; 2.40 A; B=2-339.[ExPASy / RCSB / EBI]
2BP7; X-ray; 2.90 A; B/D/F/H=1-339.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1QS0; -.
2BP7; -.
ModBase P09061.
Protein-protein interaction databases
DIP DIP:6209N; -.
IntAct P09061; 1.
Ontologies
GO
GO:0003863; Molecular function: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity (inferred from electronic annotation from EC).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR005476; Transketo_C.
IPR005475; Transketo_Cen_R.
IPR015941; Transketolase_C-like.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.920; Transketo_C_like; 1.
Pfam PF02779; Transket_pyr; 1.
PF02780; Transketolase_C; 1.
Pfam graphical view of domain structure.
Other
ProtoNet P09061.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Oxidoreductase; Thiamine pyrophosphate.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   339  339     2-oxoisovalerate dehydrogenase subunit beta. PRO_0000162251
STRAND   3     5  3      
HELIX   8    22  15      
STRAND   26    30  5      
STRAND   34    36  3      
TURN   42    45  4      
HELIX   46    50  5      
TURN   52    54  3      
STRAND   55    57  3      
HELIX   62    75  14      
STRAND   78    82  5      
HELIX   86    88  3      
HELIX   90    92  3      
HELIX   93    97  5      
TURN   98   102  5      
HELIX   103   106  4      
TURN   107   109  3      
STRAND   116   121  6      
STRAND   124   126  3      
STRAND   129   132  4      
HELIX   136   139  4      
STRAND   146   148  3      
HELIX   153   165  13      
STRAND   166   168  3      
STRAND   170   175  6      
HELIX   176   178  3      
STRAND   179   181  3      
STRAND   187   189  3      
STRAND   201   205  5      
STRAND   216   218  3      
STRAND   224   227  4      
HELIX   231   242  12      
STRAND   247   250  4      
STRAND   252   256  5      
HELIX   259   269  11      
STRAND   272   278  7      
HELIX   285   295  11      
STRAND   296   299  4      
STRAND   305   308  4      
HELIX   319   322  4      
HELIX   326   335  10      
Sequence information
Length: 339 AA [This is the length of the unprocessed precursor] Molecular weight: 37134 Da [This is the MW of the unprocessed precursor] CRC64: 318FE1E403B2AEA5 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MATTTMTMIQ ALRSAMDVML ERDDNVVVYG QDVGYFGGVF RCTEGLQTKY GKSRVFDAPI 

        70         80         90        100        110        120 
SESGIVGTAV GMGAYGLRPV VEIQFADYFY PASDQIVSEM ARLRYRSAGE FIAPLTLRMP 

       130        140        150        160        170        180 
CGGGIYGGQT HSQSPEAMFT QVCGLRTVMP SNPYDAKGLL IASIECDDPV IFLEPKRLYN 

       190        200        210        220        230        240 
GPFDGHHDRP VTPWSKHPHS AVPDGYYTVP LDKAAITRPG NDVSVLTYGT TVYVAQVAAE 

       250        260        270        280        290        300 
ESGVDAEVID LRSLWPLDLD TIVESVKKTG RCVVVHEATR TCGFGAELVS LVQEHCFHHL 

       310        320        330 
EAPIERVTGW DTPYPHAQEW AYFPGPSRVG AALKKVMEV 

P09061 in FASTA format

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