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UniProtKB/Swiss-Prot entry P08204

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ARAB_ECOLI
Primary accession number P08204
Secondary accession number P78041
Integrated into Swiss-Prot on August 1, 1988
Sequence was last modified on January 23, 2007 (Sequence version 4)
Annotations were last modified on    December 16, 2008 (Entry version 76)
Name and origin of the protein
Protein name Ribulokinase
Synonym EC 2.7.1.16
Gene name
Name: araB
OrderedLocusNames: b0063, JW0062
From
Escherichia coli (strain K12) [TaxID: 83333] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Protein existence 1: Evidence at protein level;
References
[1]
 NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1016/0378-1119(86)90067-3; PubMed=3549454 [NCBI, ExPASy, EBI, Israel, Japan]
Lee N., Gielow W., Martin R., Hamilton E., Fowler A.;
"The organization of the araBAD operon of Escherichia coli.";
Gene 47:231-244(1986).
[2]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12;
DOI=10.1093/nar/20.13.3305; PubMed=1630901 [NCBI, ExPASy, EBI, Israel, Japan]
Yura T., Mori H., Nagai H., Nagata T., Ishihama A., Fujita N., Isono K., Mizobuchi K., Nakata A.;
"Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region.";
Nucleic Acids Res. 20:3305-3308(1992).
[3]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
DOI=10.1126/science.277.5331.1453; PubMed=9278503 [NCBI, ExPASy, EBI, Israel, Japan]
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1474(1997).
[4]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND SEQUENCE REVISION.
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
DOI=10.1038/msb4100049; PubMed=16738553 [NCBI, ExPASy, EBI, Israel, Japan]
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[5]
 NUCLEOTIDE SEQUENCE [MRNA] OF 1-14, AND PROTEIN SEQUENCE OF 2-14.
PubMed=189315 [NCBI, ExPASy, EBI, Israel, Japan]
Lee N., Carbon J.;
"Nucleotide sequence of the 5' end of araBAD operon messenger RNA in Escherichia coli B/r.";
Proc. Natl. Acad. Sci. U.S.A. 74:49-53(1977).
[6]
 NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-6.
STRAIN=K12;
PubMed=357433 [NCBI, ExPASy, EBI, Israel, Japan]
Smith B.R., Schleif R.;
"Nucleotide sequence of the L-arabinose regulatory region of Escherichia coli K12.";
J. Biol. Chem. 253:6931-6933(1978).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M15263; AAA23462.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
J01641; AAA23467.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U00096; AAC73174.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP009048; BAB96632.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
K01304; AAA23465.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR G64727; KIECRU.
RefSeq AP_000727.1; -.
NP_414605.1; -.
3D structure databases
ModBase P08204.
Protein-protein interaction databases
IntAct P08204; 1.
Enzyme and pathway databases
BioCyc EcoCyc:RIBULOKIN-MON; -.
2D gel databases
ECO2DBASE D055.0; 6TH EDITION.
Organism-specific databases
EchoBASE EB0051; -.
EcoGene EG10053; araB.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0008741; Molecular function: ribulokinase activity (inferred from electronic annotation from HAMAP).
GO:0019572; Biological process: L-arabinose catabolic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00520; -; 1.
PBIL [Tree]
InterPro IPR000577; FGGY_kin.
IPR005929; L_ribulokin.
Graphical view of domain structure.
PANTHER PTHR10196; FGGY_kin; 1.
Pfam PF02782; FGGY_C; 1.
PF00370; FGGY_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01234; L-ribulokinase; 1.
Genome annotation databases
GeneID 946017; -.
GenomeReviews AP009048_GR; JW0062.
U00096_GR; b0063.
KEGG ecj:JW0062; -.
eco:b0063; -.
Phylogenomic databases
HOGENOM P08204; -.
Genome annotation databases
CMR P08204; b0063.
Other
ProtoNet P08204.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Arabinose catabolism; Carbohydrate metabolism; Complete proteome; Direct protein sequencing; Kinase; Transferase.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
INIT_MET   1     1        Removed. 
CHAIN   2   566  565     Ribulokinase. PRO_0000198358
CONFLICT   23    23        T -> S (in Ref. 1 and 2). 
CONFLICT   127   128        EA -> RS (in Ref. 1 and 2). 
CONFLICT   350   350        G -> S (in Ref. 1 and 2). 
CONFLICT   365   365        T -> A (in Ref. 1 and 2). 
CONFLICT   403   403        T -> S (in Ref. 1 and 2). 
CONFLICT   525   525        C -> R (in Ref. 1 and 2). 
Sequence information
Length: 566 AA [This is the length of the unprocessed precursor] Molecular weight: 61089 Da [This is the MW of the unprocessed precursor] CRC64: 4A12010092139D8A [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MAIAIGLDFG SDSVRALAVD CATGEEIATS VEWYPRWQKG QFCDAPNNQF RHHPRDYIES 

        70         80         90        100        110        120 
MEAALKTVLA ELSVEQRAAV VGIGVDSTGS TPAPIDADGN VLALRPEFAE NPNAMFVLWK 

       130        140        150        160        170        180 
DHTAVEEAEE ITRLCHAPGN VDYSRYIGGI YSSEWFWAKI LHVTRQDSAV AQSAASWIEL 

       190        200        210        220        230        240 
CDWVPALLSG TTRPQDIRRG RCSAGHKSLW HESWGGLPPA SFFDELDPIL NRHLPSPLFT 

       250        260        270        280        290        300 
DTWTADIPVG TLCPEWAQRL GLPESVVISG GAFDCHMGAV GAGAQPNALV KVIGTSTCDI 

       310        320        330        340        350        360 
LIADKQSVGE RAVKGICGQV DGSVVPGFIG LEAGQSAFGD IYAWFGRVLG WPLEQLAAQH 

       370        380        390        400        410        420 
PELKTQINAS QKQLLPALTE AWAKNPSLDH LPVVLDWFNG RRTPNANQRL KGVITDLNLA 

       430        440        450        460        470        480 
TDAPLLFGGL IAATAFGARA IMECFTDQGI AVNNVMALGG IARKNQVIMQ ACCDVLNRPL 

       490        500        510        520        530        540 
QIVASDQCCA LGAAIFAAVA AKVHADIPSA QQKMASAVEK TLQPCSEQAQ RFEQLYRRYQ 

       550        560 
QWAMSAEQHY LPTSAPAQAA QAVATL
P08204 in FASTA format

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