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UniProtKB/Swiss-Prot entry P00118


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CYC6_SPIMA
Primary accession number P00118
Secondary accession numbers None
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on July 21, 1986 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 73)
Name and origin of the protein
Protein name Cytochrome c6
Synonyms Soluble cytochrome f
Cytochrome c553
Cytochrome c-553
Gene name
Name: petJ
From
Spirulina maxima (Arthrospira maxima) [TaxID: 129910] 
Taxonomy Bacteria; Cyanobacteria; Oscillatoriales; Arthrospira.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE.
DOI=10.1038/253285a0; PubMed=803642 [NCBI, ExPASy, EBI, Israel, Japan]
Ambler R.P., Bartsch R.G.;
"Amino acid sequence similarity between cytochrome f from a blue-green bacterium and algal chloroplasts.";
Nature 253:285-288(1975).
[2]
X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS).
DOI=10.1021/bi002679p; PubMed=11478889 [NCBI, ExPASy, EBI, Israel, Japan]
Sawaya M.R., Krogmann D.W., Serag A., Ho K.K., Yeates T.O., Kerfeld C.A.;
"Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.";
Biochemistry 40:9215-9225(2001).
[3]
X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS).
DOI=10.1107/S0907444902006534; PubMed=12077429 [NCBI, ExPASy, EBI, Israel, Japan]
Kerfeld C.A., Sawaya M.R., Krogmann D.W., Yeates T.O.;
"Structure of cytochrome c6 from Arthrospira maxima: an assembly of 24 subunits in a nearly symmetric shell.";
Acta Crystallogr. D 58:1104-1110(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
PIR A00110; CCSG6.
3D structure databases
PDB
1F1F; X-ray; 2.70 A; A=1-89.[ExPASy / RCSB / EBI]
1KIB; X-ray; 3.50 A; A/B/C/D/E/F/G/H=1-89.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1F1F; -.
1KIB; -.
ModBase P00118.
Ontologies
GO
GO:0031977; Cellular component: thylakoid lumen (inferred from electronic annotation from UniProtKB-SubCell).
GO:0009055; Molecular function: electron carrier activity (inferred from electronic annotation from HAMAP).
GO:0020037; Molecular function: heme binding (inferred from electronic annotation from InterPro).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0022900; Biological process: electron transport chain (inferred from electronic annotation from UniProtKB-KW).
GO:0015979; Biological process: photosynthesis (inferred from electronic annotation from HAMAP).
GO:0006810; Biological process: transport (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
HAMAP MF_00594; -; 1.
PBIL [Tree]
InterPro IPR009056; Cyt_c_monohaem.
IPR003088; Cyt_CI.
IPR008168; Cyt_CIC.
Graphical view of domain structure.
Gene3D G3DSA:1.10.760.10; Cytochrome_c_R; 1.
Pfam PF00034; Cytochrom_C; 1.
Pfam graphical view of domain structure.
PRINTS PR00605; CYTCHROMECIC.
PROSITE PS51007; CYTC; 1.
PROSITE graphical view of domain structure (profiles).
Other
ProtoNet P00118.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Direct protein sequencing; Electron transport; Heme; Iron; Metal-binding; Photosynthesis; Thylakoid; Transport.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
CHAIN   1   89  89     Cytochrome c6. PRO_0000208686
METAL   18   18        Iron (heme axial ligand). 
METAL   62   62        Iron (heme axial ligand). 
BINDING   14   14        Heme (covalent). 
BINDING   17   17        Heme (covalent). 
HELIX   3   13  11      
HELIX   15   18  4      
HELIX   19   21  3      
STRAND   24   26  3      
HELIX   33   39  7      
TURN   41   45  5      
HELIX   47   57  11      
TURN   66   68  3      
HELIX   71   87  17      
Sequence information
Length: 89 AA [This is the length of the unprocessed precursor] Molecular weight: 9236 Da [This is the MW of the unprocessed precursor] CRC64: 4796D56B3EA8AF85 [This is a checksum on the sequence]
        10         20         30         40         50         60 
GDVAAGASVF SANCAACHMG GRNVIVANKT LSKSDLAKYL KGFDDDAVAA VAYQVTNGKN 

        70         80 
AMPGFNGRLS PKQIEDVAAY VVDQAEKGW 

P00118 in FASTA format

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