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UniProtKB/Swiss-Prot entry P00004


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CYC_HORSE
Primary accession number P00004
Secondary accession numbers None
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on January 23, 2007 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 81)
Name and origin of the protein
Protein name Cytochrome c
Synonyms None
Gene name
Name: CYCS
Synonyms: CYC
From
Equus caballus (Horse) [TaxID: 9796] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE OF 2-105, AND ACETYLATION AT GLY-2.
TISSUE=Heart;
PubMed=14469771 [NCBI, ExPASy, EBI, Israel, Japan]
Margoliash E., Smith E.L., Kreil G., Tuppy H.;
"Amino-acid sequence of horse heart cytochrome c.";
Nature 192:1125-1127(1961).
[2]
X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS).
PubMed=5545094 [NCBI, ExPASy, EBI, Israel, Japan]
Dickerson R.E., Takano T., Eisenberg D., Kallai O.B., Samson L., Cooper A., Margoliash E.;
"Ferricytochrome c. I. General features of the horse and bonito proteins at 2.8-A resolution.";
J. Biol. Chem. 246:1511-1533(1971).
[3]
X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS).
DOI=10.1016/0022-2836(90)90200-6; PubMed=2166170 [NCBI, ExPASy, EBI, Israel, Japan]
Bushnell G.W., Louie G.V., Brayer G.D.;
"High-resolution three-dimensional structure of horse heart cytochrome c.";
J. Mol. Biol. 214:585-595(1990).
[4]
X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS).
DOI=10.1016/S0969-2126(01)00205-2; PubMed=8591047 [NCBI, ExPASy, EBI, Israel, Japan]
Sanishvili R., Volz K.W., Westbrook E.M., Margoliash E.;
"The low ionic strength crystal structure of horse cytochrome c at 2.1-A resolution and comparison with its high ionic strength counterpart.";
Structure 3:707-716(1995).
[5]
STRUCTURE BY NMR.
DOI=10.1021/bi00427a027; PubMed=2539855 [NCBI, ExPASy, EBI, Israel, Japan]
Feng Y., Roder H., Englander S.W., Wand A.J., di Stefano D.L.;
"Proton resonance assignments of horse ferricytochrome c.";
Biochemistry 28:195-203(1989).
[6]
STRUCTURE BY NMR.
DOI=10.1021/bi961042w; PubMed=8823161 [NCBI, ExPASy, EBI, Israel, Japan]
Qi P.X., Beckman R.A., Wand A.J.;
"Solution structure of horse heart ferricytochrome c and detection of redox-related structural changes by high-resolution 1H NMR.";
Biochemistry 35:12275-12286(1996).
[7]
STRUCTURE BY NMR.
TISSUE=Heart;
DOI=10.1021/bi970724w; PubMed=9245419 [NCBI, ExPASy, EBI, Israel, Japan]
Banci L., Bertini I., Gray H.B., Luchinat C., Reddig T., Rosato A., Turano P.;
"Solution structure of oxidized horse heart cytochrome c.";
Biochemistry 36:9867-9877(1997).
Comments
  • FUNCTION: Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
  • SUBCELLULAR LOCATION: Mitochondrion matrix.
  • PTM: Binds 1 heme group per subunit.
  • MISCELLANEOUS: Mules and hinnies are heterozygous, having equal amount of horse and donkey cytochromes c.
  • SIMILARITY: Belongs to the cytochrome c family.
  • WEB RESOURCE: Name=Protein Spotlight; Note=Life shuttle - Issue 76 of November 2006; URL="http://www.expasy.org/spotlight/back_issues/sptlt076.shtml";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
PIR A00005; CCHO.
3D structure databases
PDB
1AKK; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1CRC; X-ray; 2.08 A; A/B=1-105.[ExPASy / RCSB / EBI]
1FI7; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1FI9; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1GIW; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1HRC; X-ray; 1.90 A; A=1-105.[ExPASy / RCSB / EBI]
1I5T; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1LC1; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1LC2; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1M60; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1OCD; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
1U75; X-ray; 2.55 A; B=1-105.[ExPASy / RCSB / EBI]
1WEJ; X-ray; 1.80 A; F=1-105.[ExPASy / RCSB / EBI]
2FRC; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
2GIW; NMR; -; A=1-105.[ExPASy / RCSB / EBI]
2PCB; X-ray; 2.80 A; B=1-105.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1AKK; -.
1CRC; -.
1FI7; -.
1FI9; -.
1GIW; -.
1HRC; -.
1I5T; -.
1LC1; -.
1LC2; -.
1M60; -.
1OCD; -.
1U75; -.
1WEJ; -.
2FRC; -.
2GIW; -.
2PCB; -.
DisProt DP00006; -.
ModBase P00004.
Ontologies
GO
GO:0005829; Cellular component: cytosol (inferred from sequence or structural similarity from UniProtKB).
GO:0005759; Cellular component: mitochondrial matrix (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005746; Cellular component: mitochondrial respiratory chain (inferred from electronic annotation from UniProtKB-KW).
GO:0045155; Molecular function: electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity (inferred from sequence or structural similarity from UniProtKB).
GO:0020037; Molecular function: heme binding (inferred from electronic annotation from InterPro).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0006309; Biological process: DNA fragmentation during apoptosis (inferred from sequence or structural similarity from UniProtKB).
GO:0022900; Biological process: electron transport chain (inferred from electronic annotation from UniProtKB-KW).
GO:0006810; Biological process: transport (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR009056; Cyt_c_monohaem.
IPR003088; Cyt_CI.
IPR002327; Cyt_CIAB.
Graphical view of domain structure.
Gene3D G3DSA:1.10.760.10; Cytochrome_c_R; 1.
PANTHER PTHR11961; Cyt_CIAB; 1.
Pfam PF00034; Cytochrom_C; 1.
Pfam graphical view of domain structure.
PRINTS PR00604; CYTCHRMECIAB.
ProDom PD000375; Cyt_CIAB; 1.
[Domain structure / List of seq. sharing at least 1 domain]
PROSITE PS51007; CYTC; 1.
PROSITE graphical view of domain structure (profiles).
Phylogenomic databases
HOVERGEN P00004; -.
Other
LinkHub P00004; -.
ProtoNet P00004.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acetylation; Direct protein sequencing; Electron transport; Heme; Iron; Metal-binding; Mitochondrion; Respiratory chain; Transport.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
INIT_MET   1     1        Removed. 
CHAIN   2   105  104     Cytochrome c. PRO_0000108217
METAL   19    19        Iron (heme axial ligand). 
METAL   81    81        Iron (heme axial ligand). 
BINDING   15    15        Heme (covalent). 
BINDING   18    18        Heme (covalent). 
MOD_RES   2     2        N-acetylglycine. 
HELIX   4    14  11      
TURN   15    18  4      
HELIX   51    55  5      
HELIX   62    70  9      
HELIX   72    75  4      
HELIX   89   102  14      
Sequence information
Length: 105 AA [This is the length of the unprocessed precursor] Molecular weight: 11833 Da [This is the MW of the unprocessed precursor] CRC64: 659BA128E53C3868 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGDVEKGKKI FVQKCAQCHT VEKGGKHKTG PNLHGLFGRK TGQAPGFTYT DANKNKGITW 

        70         80         90        100 
KEETLMEYLE NPKKYIPGTK MIFAGIKKKT EREDLIAYLK KATNE 

P00004 in FASTA format

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View entry in raw text format (no links)
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