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UniProtKB/Swiss-Prot entry O89049


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TRXR1_RAT
Primary accession number O89049
Secondary accession numbers Q9JKZ3 Q9JKZ4 Q9R1I3
Integrated into Swiss-Prot on July 19, 2004
Sequence was last modified on February 26, 2008 (Sequence version 4)
Annotations were last modified on    December 16, 2008 (Entry version 71)
Name and origin of the protein
Protein name Thioredoxin reductase 1, cytoplasmic
Synonyms TR
EC 1.8.1.9
Thioredoxin reductase TR1
NADPH-dependent thioredoxin reductase
Gene name
Name: Txnrd1
Synonyms: Trxr1
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Neuroblastoma;
DOI=10.1074/jbc.273.15.8581; PubMed=9535831 [NCBI, ExPASy, EBI, Israel, Japan]
Zhong L., Arner E.S.J., Ljung J., Aaslund F., Holmgren A.;
"Rat and calf thioredoxin reductase are homologous to glutathione reductase with a carboxyl-terminal elongation containing a conserved catalytically active penultimate selenocysteine residue.";
J. Biol. Chem. 273:8581-8591(1998).
[2]
NUCLEOTIDE SEQUENCE [MRNA], AND SELENOCYSTEINE AT SEC-497.
TISSUE=Kidney, and Liver;
DOI=10.1042/0264-6021:3400439; PubMed=10333487 [NCBI, ExPASy, EBI, Israel, Japan]
Fujiwara N., Fujii T., Fujii J., Taniguchi N.;
"Functional expression of rat thioredoxin reductase: selenocysteine insertion sequence element is essential for the active enzyme.";
Biochem. J. 340:439-444(1999).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
Rundlof A., Arner E.S.J.;
"Molecular cloning of thioredoxin reductase 1 from rat liver.";
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases.
[4]
PROTEIN SEQUENCE OF 450-456 AND 487-498, FUNCTION, MUTAGENESIS OF SEC-497, AND CHARACTERIZATION.
DOI=10.1074/jbc.M000690200; PubMed=10849437 [NCBI, ExPASy, EBI, Israel, Japan]
Zhong L., Holmgren A.;
"Essential role of selenium in the catalytic activities of mammalian thioredoxin reductase revealed by characterization of recombinant enzymes with selenocysteine mutations.";
J. Biol. Chem. 275:18121-18128(2000).
[5]
X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF MUTANT CYS-497 IN COMPLEX WITH NADP, DISULFIDE BOND, AND HOMODIMERIZATION.
DOI=10.1073/pnas.171178698; PubMed=11481439 [NCBI, ExPASy, EBI, Israel, Japan]
Sandalova T., Zhong L., Lindqvist Y., Holmgren A., Schneider G.;
"Three-dimensional structure of a mammalian thioredoxin reductase: implications for mechanism and evolution of a selenocysteine-dependent enzyme.";
Proc. Natl. Acad. Sci. U.S.A. 98:9533-9538(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U63923; AAC35244.2; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF108213; AAD43039.1; ALT_SEQ; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF220760; AAF32362.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF220761; AAF32363.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
UniGene Rn.67581
3D structure databases
PDB
1H6V; X-ray; 3.00 A; A/B/C/D/E/F=1-498.[ExPASy / RCSB / EBI]
PDBsum 1H6V; -.
ModBase O89049.
Organism-specific databases
RGD 61959; Txnrd1.
Gene expression databases
ArrayExpress O89049; -.
Ontologies
GO
GO:0050660; Molecular function: FAD binding (inferred from electronic annotation from InterPro).
GO:0050661; Molecular function: NADP binding (inferred from electronic annotation from InterPro).
GO:0016654; Molecular function: oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor (inferred from electronic annotation from InterPro).
GO:0008430; Molecular function: selenium binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004791; Molecular function: thioredoxin-disulfide reductase activity (inferred from electronic annotation from EC).
GO:0045454; Biological process: cell redox homeostasis (inferred from electronic annotation from InterPro).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR013027; FAD_pyr_nucl-diS_OxRdtase.
IPR000815; Hg_reductase.
IPR001100; Pyr_nuc-diS_OxRdtase.
IPR004099; Pyr_nucl-diS_OxRdtase_dimer.
IPR012999; Pyr_OxRdtase_I_AS.
IPR001327; Pyr_OxRdtase_NAD_bd.
IPR006338; Reduct_Se.
Graphical view of domain structure.
Gene3D G3DSA:3.30.390.30; Pyr_redox_dim; 1.
PANTHER PTHR22912:SF23; Reduct_Se; 1.
Pfam PF00070; Pyr_redox; 1.
PF07992; Pyr_redox_2; 1.
PF02852; Pyr_redox_dim; 1.
Pfam graphical view of domain structure.
PRINTS PR00368; FADPNR.
PR00945; HGRDTASE.
PR00411; PNDRDTASEI.
ProDom PD000139; FAD_pyr_redox; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR01438; TGR; 1.
PROSITE PS00076; PYRIDINE_REDOX_1; 1.
Genome annotation databases
Ensembl ENSRNOG00000009088; Rattus norvegicus. [Contig view]
Phylogenomic databases
HOVERGEN O89049; -.
Other
ProtoNet O89049.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cytoplasm; Direct protein sequencing; FAD; Flavoprotein; NADP; Oxidoreductase; Phosphoprotein; Redox-active center; Selenium; Selenocysteine.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   498  498     Thioredoxin reductase 1, cytoplasmic. PRO_0000067985
NP_BIND   42    59  18     FAD (By similarity). 
ACT_SITE   471   471        Proton acceptor. 
NON_STD   497   497        Selenocysteine. 
MOD_RES   11    11        Phosphotyrosine (By similarity). 
MOD_RES   131   131        Phosphotyrosine (By similarity). 
MOD_RES   422   422        Phosphotyrosine (By similarity). 
DISULFID   59    64        Redox-active. 
CROSSLNK   496   497        Cysteinyl-selenocysteine (Cys-Sec). 
MUTAGEN   497   497        U->S: Loss of activity. 
MUTAGEN   497   497        Missing: Loss of activity. 
CONFLICT   52    53        NG -> RW (in Ref. 3; AAF32363). 
CONFLICT   451   455        GFAAA -> ALQP (in Ref. 2 and 3; AAF32362). 
STRAND   12    18  7      
HELIX   22    31  10      
HELIX   32    34  3      
STRAND   38    41  4      
HELIX   57    62  6      
HELIX   64    82  19      
TURN   83    87  5      
HELIX   98   123  26      
STRAND   126   128  3      
STRAND   131   136  6      
STRAND   139   143  5      
STRAND   149   159  11      
STRAND   163   165  3      
HELIX   173   176  4      
HELIX   180   183  4      
STRAND   192   196  5      
HELIX   200   211  12      
STRAND   216   225  10      
HELIX   230   242  13      
STRAND   245   250  6      
STRAND   252   260  9      
STRAND   266   272  7      
STRAND   278   288  11      
STRAND   293   296  4      
TURN   303   305  3      
STRAND   311   313  3      
STRAND   329   331  3      
HELIX   333   335  3      
HELIX   343   359  17      
STRAND   372   374  3      
STRAND   376   378  3      
STRAND   380   384  5      
HELIX   387   394  8      
HELIX   396   398  3      
STRAND   399   406  8      
HELIX   409   412  4      
TURN   413   415  3      
STRAND   421   428  8      
HELIX   429   431  3      
STRAND   434   442  9      
HELIX   445   456  12      
HELIX   461   466  6      
HELIX   474   480  7      
HELIX   485   487  3      
Sequence information
Length: 498 AA [This is the length of the unprocessed precursor] Molecular weight: 54386 Da [This is the MW of the unprocessed precursor] CRC64: 2F1EC2A8EAE7BF3E [This is a checksum on the sequence]
        10         20         30         40         50         60 
MNDSKDAPKS YDFDLIIIGG GSGGLAAAKE AAKFDKKVMV LDFVTPTPLG TNGGLGGTCV 

        70         80         90        100        110        120 
NVGCIPKKLM HQAALLGQAL KDSRNYGWKL EDTVKHDWEK MTESVQNHIG SLNWGYRVAL 

       130        140        150        160        170        180 
REKKVVYENA YGKFIGPHKI MATNNKGKEK VYSAERFLIA TGERPRYLGI PGDKEYCISS 

       190        200        210        220        230        240 
DDLFSLPYCP GKTLVVGASY VALECAGFLA GIGLDVTVMV RSILLRGFDQ DMANKIGEHM 

       250        260        270        280        290        300 
EEHGIKFIRQ FVPTKIEQIE AGTPGRLKVT AKSTNSEETI EDEFNTVLLA VGRDSCTRTI 

       310        320        330        340        350        360 
GLETVGVKIN EKTGKIPVTD EEQTNVPYIY AIGDILEGKL ELTPVAIQAG RLLAQRLYGG 

       370        380        390        400        410        420 
STVKCDYDNV PTTVFTPLEY GCCGLSEEKA VEKFGEENIE VYHSFFWPLE WTVPSRDNNK 

       430        440        450        460        470        480 
CYAKVICNLK DNERVVGFHV LGPNAGEVTQ GFAAAKCGLT KQQLDSTIGI HPVCAEIFTT 

       490 
LSVTKRSGGD ILQSGCUG 

O89049 in FASTA format

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