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UniProtKB/Swiss-Prot entry O14832


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PAHX_HUMAN
Primary accession number O14832
Secondary accession number B1ALH5
Integrated into Swiss-Prot on July 15, 1999
Sequence was last modified on January 1, 1998 (Sequence version 1)
Annotations were last modified on    December 16, 2008 (Entry version 93)
Name and origin of the protein
Protein name Phytanoyl-CoA dioxygenase, peroxisomal [Precursor]
Synonyms EC 1.14.11.18
Phytanoyl-CoA alpha-hydroxylase
PhyH
Phytanic acid oxidase
Gene name
Name: PHYH
Synonyms: PAHX
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND VARIANT RD TRP-275.
DOI=10.1038/ng1097-185; PubMed=9326939 [NCBI, ExPASy, EBI, Israel, Japan]
Mihalik S.J., Morrell J.C., Kim D., Sachsteder K.A., Watkins P.A., Gould S.J.;
"Identification of PAHX, a Refsum disease gene.";
Nat. Genet. 17:185-189(1997).
[2]
NUCLEOTIDE SEQUENCE, AND VARIANT RD HIS-269.
DOI=10.1038/ng1097-190; PubMed=9326940 [NCBI, ExPASy, EBI, Israel, Japan]
Jansen G.A., Ofman R., Ferdinandusse S., Ijlst L., Muijsers A.O., Skjeldal O.H., Stokke O., Jakobs C., Besley G.T.N., Wraith J.E., Wanders R.J.A.;
"Refsum disease is caused by mutations in the phytanoyl-CoA hydroxylase gene.";
Nat. Genet. 17:190-193(1997).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Leukemia;
DOI=10.1073/pnas.96.5.2104; PubMed=10051602 [NCBI, ExPASy, EBI, Israel, Japan]
Chambraud B., Radanyi C., Camonis J.H., Rajkowski K., Schumacher M., Baulieu E.-E.;
"Immunophilins, Refsum disease, and lupus nephritis: the peroxisomal enzyme phytanoyl-CoA alpha-hydroxylase is a new FKBP-associated protein.";
Proc. Natl. Acad. Sci. U.S.A. 96:2104-2109(1999).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS RD SER-29; SER-173; LYS-176; GLY-177; ALA-192 INS; ARG-193; GLN-197; PHE-199; SER-204; TYR-220; GLN-245; SER-257; HIS-269; GLN-275 AND TRP-275.
DOI=10.1093/hmg/9.8.1195; PubMed=10767344 [NCBI, ExPASy, EBI, Israel, Japan]
Jansen G.A., Hogenhout E.M., Ferdinandusse S., Waterham H.R., Ofman R., Jakobs C., Skjeldal O.H., Wanders R.J.A.;
"Human phytanoyl-CoA hydroxylase: resolution of the gene structure and the molecular basis of Refsum's disease.";
Hum. Mol. Genet. 9:1195-1200(2000).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02462; PubMed=15164054 [NCBI, ExPASy, EBI, Israel, Japan]
Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J., Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.;
"The DNA sequence and comparative analysis of human chromosome 10.";
Nature 429:375-381(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
INTERACTION WITH PHYHIP.
DOI=10.1016/S0169-328X(99)00304-6; PubMed=10686344 [NCBI, ExPASy, EBI, Israel, Japan]
Lee Z.H., Kim H.-H., Ahn K.Y., Seo K.H., Kim J.K., Bae C.S., Kim K.K.;
"Identification of a brain specific protein that associates with a Refsum disease gene product, phytanoyl-CoA alpha-hydroxylase.";
Brain Res. Mol. Brain Res. 75:237-247(2000).
[8]
X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 31-338 IN COMPLEX WITH IRON AND ALPHA-KETOGLUTARATE, AND COFACTOR.
DOI=10.1074/jbc.M507528200; PubMed=16186124 [NCBI, ExPASy, EBI, Israel, Japan]
McDonough M.A., Kavanagh K.L., Butler D., Searls T., Oppermann U., Schofield C.J.;
"Structure of human phytanoyl-CoA 2-hydroxylase identifies molecular mechanisms of Refsum disease.";
J. Biol. Chem. 280:41101-41110(2005).
[9]
REVIEW ON VARIANTS RD.
DOI=10.1002/humu.10315; PubMed=14974078 [NCBI, ExPASy, EBI, Israel, Japan]
Jansen G.A., Waterham H.R., Wanders R.J.A.;
"Molecular basis of Refsum disease: sequence variations in phytanoyl-CoA hydroxylase (PHYH) and the PTS2 receptor (PEX7).";
Hum. Mutat. 23:209-218(2004).
[10]
VARIANT RD SER-204.
PubMed=10709665 [NCBI, ExPASy, EBI, Israel, Japan]
Jansen G.A., Ferdinandusse S., Hogenhout E.M., Verhoeven N.M., Jakobs C., Wanders R.J.A.;
"Phytanoyl-CoA hydroxylase deficiency. Enzymological and molecular basis of classical Refsum disease.";
Adv. Exp. Med. Biol. 466:371-376(1999).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF023462; AAB81834.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF112977; AAD20602.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242386; AAF74123.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242379; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242380; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242381; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242382; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242383; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242384; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF242385; AAF74123.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL138764; CAI12911.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC029512; AAH29512.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_006205.1; -.
UniGene Hs.498732
3D structure databases
PDB
2A1X; X-ray; 2.50 A; A=31-338.[ExPASy / RCSB / EBI]
PDBsum 2A1X; -.
DisProt DP00327; -.
ModBase O14832.
Protein-protein interaction databases
IntAct O14832; 7.
PTM databases
PhosphoSite O14832; -.
Organism-specific databases
GeneCards GC10M013359; -.
H-InvDB HIX0008654; -.
HGNC HGNC:8940; PHYH.
GenAtlas PHYH.
HPA HPA007598; -.
HPA011796; -.
MIM 266500; phenotype. [NCBI / EBI]
602026; gene. [NCBI / EBI]
Orphanet 773; Refsum disease.
PharmGKB PA33280; -.
GeneCards O14832.
Gene expression databases
ArrayExpress O14832; -.
CleanEx HS_PHYH; -.
GermOnline ENSG00000107537; Homo sapiens.
Ontologies
GO
GO:0005777; Cellular component: peroxisome (traceable author statement from ProtInc).
GO:0009055; Molecular function: electron carrier activity (traceable author statement from UniProtKB).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0031418; Molecular function: L-ascorbic acid binding (inferred from electronic annotation from UniProtKB-KW).
GO:0048244; Molecular function: phytanoyl-CoA dioxygenase activity (inferred from electronic annotation from EC).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0006629; Biological process: lipid metabolic process (traceable author statement from ProtInc).
GO:0007399; Biological process: nervous system development (traceable author statement from ProtInc).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0050896; Biological process: response to stimulus (inferred from electronic annotation from UniProtKB-KW).
GO:0007605; Biological process: sensory perception of sound (inferred from electronic annotation from UniProtKB-KW).
GO:0007601; Biological process: visual perception (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR008775; Phytyl_CoA_dOase.
Graphical view of domain structure.
Pfam PF05721; PhyH; 1.
Pfam graphical view of domain structure.
Proteomics databases
PRIDE O14832; -.
Genome annotation databases
Ensembl ENSG00000107537; Homo sapiens. [Contig view]
GeneID 5264; -.
Phylogenomic databases
HOVERGEN O14832; -.
Other
DrugBank DB00025; Antihemophilic Factor.
DB00126; Vitamin C.
LinkHub O14832; -.
NextBio 20330; -.
SOURCE PHYH; Homo sapiens.
ProtoNet O14832.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cataract; Deafness; Dioxygenase; Disease mutation; Ichthyosis; Iron; Metal-binding; Oxidoreductase; Peroxisome; Peroxisome biogenesis disorder; Polymorphism; Retinitis pigmentosa; Sensory transduction; Transit peptide; Vision; Vitamin C.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
TRANSIT   1    30  30     Peroxisome (By similarity). 
CHAIN   31   338  308     Phytanoyl-CoA dioxygenase, peroxisomal. PRO_0000024053
REGION   175   177  3     Alpha-ketoglutarate binding. 
METAL   175   175        Iron. 
METAL   177   177        Iron. 
METAL   264   264        Iron. 
BINDING   120   120        Alpha-ketoglutarate. 
BINDING   157   157        Alpha-ketoglutarate. 
BINDING   193   193        Alpha-ketoglutarate. 
BINDING   266   266        Alpha-ketoglutarate. 
BINDING   275   275        Alpha-ketoglutarate. 
VARIANT   29    29  1     P -> S (in RD; could be a rare polymorphism). VAR_017482 
VARIANT   83    83  1     N -> Y (in RD). VAR_018619 
VARIANT   173   173  1     P -> S (in RD). VAR_017483 
VARIANT   175   175  1     H -> R (in RD). VAR_018631 
VARIANT   176   176  1     Q -> K (in RD). VAR_017484 
VARIANT   177   177  1     D -> G (in RD; total loss of activity). VAR_017485 
VARIANT   192   192  1     A -> AA (in RD). VAR_012980
VARIANT   193   193  1     W -> R (in RD). VAR_017486 
VARIANT   197   197  1     E -> Q (in RD). VAR_017487 
VARIANT   199   199  1     I -> F (in RD). VAR_017488 
VARIANT   204   204  1     G -> S (in RD; total loss of activity). VAR_017489 
VARIANT   215   215  1     G -> S (in dbSNP:rs7901902 [NCBI]). VAR_050528 
VARIANT   220   220  1     H -> Y (in RD). VAR_017490 
VARIANT   245   245  1     R -> Q (in RD; partial loss of activity). VAR_017491 
VARIANT   257   257  1     F -> S (in RD). VAR_017492 
VARIANT   269   269  1     N -> H (in RD). VAR_005525 
VARIANT   275   275  1     R -> Q (in RD; total loss of activity). VAR_017493 
VARIANT   275   275  1     R -> W (in RD; total loss of activity). VAR_005526 
HELIX   57    64  8      
STRAND   65    69  5      
HELIX   75    89  15      
STRAND   99   101  3      
STRAND   104   107  4      
STRAND   115   117  3      
STRAND   120   122  3      
HELIX   128   135  8      
HELIX   137   147  11      
STRAND   149   161  13      
HELIX   177   180  4      
HELIX   186   188  3      
STRAND   189   197  9      
STRAND   206   208  3      
HELIX   212   214  3      
STRAND   246   248  3      
STRAND   255   258  4      
STRAND   264   266  3      
STRAND   271   273  3      
STRAND   275   284  10      
HELIX   296   301  6      
HELIX   320   327  8      
STRAND   329   333  5      
Sequence information
Length: 338 AA [This is the length of the unprocessed precursor] Molecular weight: 38538 Da [This is the MW of the unprocessed precursor] CRC64: FBF9639E7C79A6B0 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MEQLRAAARL QIVLGHLGRP SAGAVVAHPT SGTISSASFH PQQFQYTLDN NVLTLEQRKF 

        70         80         90        100        110        120 
YEENGFLVIK NLVPDADIQR FRNEFEKICR KEVKPLGLTV MRDVTISKSE YAPSEKMITK 

       130        140        150        160        170        180 
VQDFQEDKEL FRYCTLPEIL KYVECFTGPN IMAMHTMLIN KPPDSGKKTS RHPLHQDLHY 

       190        200        210        220        230        240 
FPFRPSDLIV CAWTAMEHIS RNNGCLVVLP GTHKGSLKPH DYPKWEGGVN KMFHGIQDYE 

       250        260        270        280        290        300 
ENKARVHLVM EKGDTVFFHP LLIHGSGQNK TQGFRKAISC HFASADCHYI DVKGTSQENI 

       310        320        330 
EKEVVGIAHK FFGAENSVNL KDIWMFRARL VKGERTNL 

O14832 in FASTA format

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