ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry O00469


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name PLOD2_HUMAN
Primary accession number O00469
Secondary accession number Q8N170
Integrated into Swiss-Prot on December 15, 1998
Sequence was last modified on April 26, 2005 (Sequence version 2)
Annotations were last modified on    December 16, 2008 (Entry version 80)
Name and origin of the protein
Protein name Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Precursor]
Synonyms EC 1.14.11.4
Lysyl hydroxylase 2
LH2
Gene name
Name: PLOD2
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Kidney;
DOI=10.1074/jbc.272.11.6831; PubMed=9054364 [NCBI, ExPASy, EBI, Israel, Japan]
Valtavaara M., Papponen H., Pirttila A.M., Hiltunen K., Helander H., Myllylae R.;
"Cloning and characterization of a novel human lysyl hydroxylase isoform highly expressed in pancreas and muscle.";
J. Biol. Chem. 272:6831-6834(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), AND TISSUE SPECIFICITY.
TISSUE=Skin fibroblast;
DOI=10.1016/S0945-053X(99)00013-X; PubMed=10372558 [NCBI, ExPASy, EBI, Israel, Japan]
Yeowell H.N., Walker L.C.;
"Tissue specificity of a new splice form of the human lysyl hydroxylase 2 gene.";
Matrix Biol. 18:179-187(1999).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Placenta;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-320 AND TYR-323, AND MASS SPECTROMETRY.
TISSUE=Platelet;
DOI=10.1021/pr0704130; PubMed=18088087 [NCBI, ExPASy, EBI, Israel, Japan]
Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A.;
"Phosphoproteome of resting human platelets.";
J. Proteome Res. 7:526-534(2008).
[5]
VARIANTS BRKS2 VAL-601 AND ILE-608.
DOI=10.1074/jbc.M307380200; PubMed=12881513 [NCBI, ExPASy, EBI, Israel, Japan]
van der Slot A.J., Zuurmond A.-M., Bardoel A.F.J., Wijmenga C., Pruijs H.E.H., Sillence D.O., Brinckmann J., Abraham D.J., Black C.M., Verzijl N., DeGroot J., Hanemaaijer R., TeKoppele J.M., Huizinga T.W.J., Bank R.A.;
"Identification of PLOD2 as telopeptide lysyl hydroxylase, an important enzyme in fibrosis.";
J. Biol. Chem. 278:40967-40972(2003).
[6]
VARIANT BRKS2 HIS-598.
DOI=10.1002/ajmg.a.30231; PubMed=15523624 [NCBI, ExPASy, EBI, Israel, Japan]
Ha-Vinh R., Alanay Y., Bank R.A., Campos-Xavier A.B., Zankl A., Superti-Furga A., Bonafe L.;
"Phenotypic and molecular characterization of Bruck syndrome (osteogenesis imperfecta with contractures of the large joints) caused by a recessive mutation in PLOD2.";
Am. J. Med. Genet. A 131:115-120(2004).
Comments
  • FUNCTION: Forms hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. These hydroxylysines serve as sites of attachment for carbohydrate units and are essential for the stability of the intermolecular collagen cross-links.
  • CATALYTIC ACTIVITY: Procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2.
  • COFACTOR: Iron (By similarity).
  • COFACTOR: Ascorbate (By similarity).
  • SUBUNIT: Homodimer (By similarity).
  • INTERACTION:
    Q9Y230:RUVBL2; NbExp=1; IntAct=EBI-1047459, EBI-352939;
  • SUBCELLULAR LOCATION: Rough endoplasmic reticulum membrane; Peripheral membrane protein; Lumenal side.
  • ALTERNATIVE PRODUCTS: 2 named isoforms [FASTA] produced by alternative splicing.
    Name1
    Isoform IDO00469-1
    This is the isoform sequence displayed in this entry.
    Name2
    SynonymsA
    Isoform IDO00469-2
    Features which should be applied to build the isoform sequence: VSP_013467.
  • TISSUE SPECIFICITY: Highly expressed in pancreas and muscle. Isoform 1 and isoform 2 are expressed in the majority of the examined cell types. Isoform 2 is specifically expressed in skin, lung, dura and aorta.
  • DISEASE: Defects in PLOD2 are the cause of Bruck syndrome 2 (BRKS2) [MIM:609220]. Bruck syndrome [MIM:259450], also known as osteogenesis imperfecta with congenital joint contractures, is an autosomal recessive disease characterized by generalized osteopenia, joint contractures at birth, fragile bones and short stature. It can be distinguished from osteogenesis imperfecta by the absence of hearing loss and dentinogenesis imperfecta, and by the presence of clubfoot and congenital joint limitations. The molecular defect is an aberrant cross-linking of bone collagen, due to underhydroxylation of lysine residues within the telopeptides of type I collagen, whereas the lysine residues in the triple helix are normal.
  • SIMILARITY: Contains 1 PKHD (prolyl/lysyl hydroxylase) domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U84573; AAB58363.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC037169; AAH37169.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A59144; A59144.
RefSeq NP_000926.2; -.
NP_891988.1; -.
UniGene Hs.477866
3D structure databases
ModBase O00469.
Protein-protein interaction databases
IntAct O00469; 1.
PTM databases
PhosphoSite O00469; -.
Organism-specific databases
GeneCards GC03M147269; -.
HGNC HGNC:9082; PLOD2.
GenAtlas PLOD2.
MIM 601865; gene. [NCBI / EBI]
609220; phenotype. [NCBI / EBI]
Orphanet 2771; Osteogenesis imperfecta - congenital joint contractures.
PharmGKB PA33412; -.
GeneCards O00469.
Gene expression databases
ArrayExpress O00469; -.
CleanEx HS_PLOD2; -.
GermOnline ENSG00000152952; Homo sapiens.
Ontologies
GO
GO:0030867; Cellular component: rough endoplasmic reticulum membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0031418; Molecular function: L-ascorbic acid binding (inferred from electronic annotation from UniProtKB-KW).
GO:0016702; Molecular function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (inferred from electronic annotation from UniProtKB-KW).
GO:0008475; Molecular function: procollagen-lysine 5-dioxygenase activity (traceable author statement from ProtInc).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0006464; Biological process: protein modification process (traceable author statement from ProtInc).
GO:0001666; Biological process: response to hypoxia (inferred from expression pattern from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR005123; 2OG-FeII_Oase.
IPR006620; Pro_4_hyd_alph.
IPR001006; Procol_lys_dOase.
Graphical view of domain structure.
Pfam PF03171; 2OG-FeII_Oxy; 1.
Pfam graphical view of domain structure.
ProDom PD011578; ProcolLys_dioxy; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00702; P4Hc; 1.
SMART graphical view of domain structure.
PROSITE PS01325; LYS_HYDROXYLASE; 1.
Proteomics databases
PRIDE O00469; -.
Genome annotation databases
Ensembl ENSG00000152952; Homo sapiens. [Contig view]
GeneID 5352; -.
KEGG hsa:5352; -.
Phylogenomic databases
HOVERGEN O00469; -.
Other
DrugBank DB00126; Vitamin C.
NextBio 20746; -.
SOURCE PLOD2; Homo sapiens.
ProtoNet O00469.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Dioxygenase; Disease mutation; Endoplasmic reticulum; Glycoprotein; Iron; Membrane; Metal-binding; Oxidoreductase; Phosphoprotein; Signal; Vitamin C.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    25  25     Potential. 
CHAIN   26   737  712     Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2. PRO_0000024683
DOMAIN   563   737  175     PKHD. 
ACT_SITE   728   728        Potential. 
METAL   666   666        Iron (By similarity). 
METAL   668   668        Iron (By similarity). 
METAL   718   718        Iron (By similarity). 
MOD_RES   320   320        Phosphothreonine. 
MOD_RES   323   323        Phosphotyrosine. 
CARBOHYD   63    63        N-linked (GlcNAc...) (Potential). 
CARBOHYD   209   209        N-linked (GlcNAc...) (Potential). 
CARBOHYD   297   297        N-linked (GlcNAc...) (Potential). 
CARBOHYD   365   365        N-linked (GlcNAc...) (Potential). 
CARBOHYD   522   522        N-linked (GlcNAc...) (Potential). 
CARBOHYD   696   696        N-linked (GlcNAc...) (Potential). 
CARBOHYD   725   725        N-linked (GlcNAc...) (Potential). 
VAR_SEQ   500   500        M -> MTLQREKDSPTPETFQMLSPPK (in isoform 2). VSP_013467
VARIANT   598   598  1     R -> H (in BRKS2). VAR_022164 
VARIANT   601   601  1     G -> V (in BRKS2). VAR_022165 
VARIANT   608   608  1     T -> I (in BRKS2). VAR_022166 
CONFLICT   624   624        H -> D (in Ref. 1; AAB58363). 
Sequence information
Length: 737 AA [This is the length of the unprocessed precursor] Molecular weight: 84686 Da [This is the MW of the unprocessed precursor] CRC64: C9AEA79A574D6B66 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGGCTVKPQL LLLALVLHPW NPCLGADSEK PSSIPTDKLL VITVATKESD GFHRFMQSAK 

        70         80         90        100        110        120 
YFNYTVKVLG QGEEWRGGDG INSIGGGQKV RLMKEVMEHY ADQDDLVVMF TECFDVIFAG 

       130        140        150        160        170        180 
GPEEVLKKFQ KANHKVVFAA DGILWPDKRL ADKYPVVHIG KRYLNSGGFI GYAPYVNRIV 

       190        200        210        220        230        240 
QQWNLQDNDD DQLFYTKVYI DPLKREAINI TLDHKCKIFQ TLNGAVDEVV LKFENGKARA 

       250        260        270        280        290        300 
KNTFYETLPV AINGNGPTKI LLNYFGNYVP NSWTQDNGCT LCEFDTVDLS AVDVHPNVSI 

       310        320        330        340        350        360 
GVFIEQPTPF LPRFLDILLT LDYPKEALKL FIHNKEVYHE KDIKVFFDKA KHEIKTIKIV 

       370        380        390        400        410        420 
GPEENLSQAE ARNMGMDFCR QDEKCDYYFS VDADVVLTNP RTLKILIEQN RKIIAPLVTR 

       430        440        450        460        470        480 
HGKLWSNFWG ALSPDGYYAR SEDYVDIVQG NRVGVWNVPY MANVYLIKGK TLRSEMNERN 

       490        500        510        520        530        540 
YFVRDKLDPD MALCRNAREM GVFMYISNRH EFGRLLSTAN YNTSHYNNDL WQIFENPVDW 

       550        560        570        580        590        600 
KEKYINRDYS KIFTENIVEQ PCPDVFWFPI FSEKACDELV EEMEHYGKWS GGKHHDSRIS 

       610        620        630        640        650        660 
GGYENVPTDD IHMKQVDLEN VWLHFIREFI APVTLKVFAG YYTKGFALLN FVVKYSPERQ 

       670        680        690        700        710        720 
RSLRPHHDAS TFTINIALNN VGEDFQGGGC KFLRYNCSIE SPRKGWSFMH PGRLTHLHEG 

       730 
LPVKNGTRYI AVSFIDP 

O00469 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by kr flag YPRC Korea Mirror sites: Australia  Brazil  Canada  China  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!