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UniProtKB/Swiss-Prot entry A3MS62

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DNLI_PYRCJ
Primary accession number A3MS62
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on April 3, 2007 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 14)
Name and origin of the protein
Protein name DNA ligase
Synonyms EC 6.5.1.1
Polydeoxyribonucleotide synthase [ATP]
Gene name
Name: lig
OrderedLocusNames: Pcal_0039
From
Pyrobaculum calidifontis (strain JCM 11548 / VA1) [TaxID: 410359] [HAMAP proteome]
Taxonomy Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Cozen A.E., Fitz-Gibbon S.T., House C.H., Saltikov C., Lowe T.M., Richardson P.;
"Complete sequence of Pyrobaculum calidifontis JCM 11548.";
Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000561; ABO07479.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001054945.1; -.
3D structure databases
ModBase A3MS62.
Ontologies
GO
GO:0005524; Molecular function: ATP binding (inferred from electronic annotation from HAMAP).
GO:0003677; Molecular function: DNA binding (inferred from electronic annotation from InterPro).
GO:0003910; Molecular function: DNA ligase (ATP) activity (inferred from electronic annotation from HAMAP).
GO:0007049; Biological process: cell cycle (inferred from electronic annotation from UniProtKB-KW).
GO:0051301; Biological process: cell division (inferred from electronic annotation from UniProtKB-KW).
GO:0006310; Biological process: DNA recombination (inferred from electronic annotation from HAMAP).
GO:0006281; Biological process: DNA repair (inferred from electronic annotation from HAMAP).
GO:0006260; Biological process: DNA replication (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00407; -; 1.
PBIL [Tree]
InterPro IPR000977; DNA_ligase.
IPR012309; DNA_ligase_A_C.
IPR012310; DNA_ligase_A_M.
IPR012308; DNA_ligase_A_N.
IPR016059; DNA_ligase_CS.
IPR012340; NA-bd_OB-fold.
Graphical view of domain structure.
Gene3D G3DSA:2.40.50.140; OB_NA_bd_sub; 1.
Pfam PF04679; DNA_ligase_A_C; 1.
PF01068; DNA_ligase_A_M; 1.
PF04675; DNA_ligase_A_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00574; dnl1; 1.
PROSITE PS00697; DNA_LIGASE_A1; 1.
PS00333; DNA_LIGASE_A2; FALSE_NEG.
PS50160; DNA_LIGASE_A3; 1.
PROSITE graphical view of domain structure (profiles).
ProtoNet A3MS62.
Genome annotation databases
GeneID 4908550; -.
GenomeReviews CP000561_GR; Pcal_0039.
KEGG pcl:Pcal_0039; -.
CMR A3MS62; Pcal_0039.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell cycle; Cell division; Complete proteome; DNA damage; DNA recombination; DNA repair; DNA replication; Ligase; Nucleotide-binding.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   583  583     DNA ligase. PRO_1000049876
ACT_SITE   251   251        N6-AMP-lysine intermediate (By similarity). 
Sequence information
Length: 583 AA [This is the length of the unprocessed precursor] Molecular weight: 64840 Da [This is the MW of the unprocessed precursor] CRC64: 3B3B4E318FC2C215 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MQFGELAKVL AAVESTTQRT TMVKLLTSLF KKAKPEEIDK IVYFILGDLR PPWEGVELGV 

        70         80         90        100        110        120 
AEKLCIRAIS KATGLSAAEL EGWYKKSGDV GEVARRALAA GKRPTLLAFA QQKPLEVAEV 

       130        140        150        160        170        180 
YDTLLKVAKA AGEGAQDLKV SLLSSLFSRA SPEEAKYIAR FVVGKLRLGV ADMTLIEALS 

       190        200        210        220        230        240 
EAFGVSKEGL ERAYHVYPDL GRLARHVAEG RPLEEIKITP GVPVLPMLAQ RLSSASEILA 

       250        260        270        280        290        300 
KLGGTAICEY KYDGERAQIH LREGSVKIFS RRLEDITHAY PDVAKAVKEA VKAREAILEG 

       310        320        330        340        350        360 
EIVAVDPDTG EMLPFQELMH RKRKHDVAEA MEAYPAVLYL FDLLYVDGED LTTQPLIYRR 

       370        380        390        400        410        420 
LRLSEVVEEG GDVYIAKWGM FDGAEDVDLF FHEAVSLGTE GLICKSPTST YEMGARGWNW 

       430        440        450        460        470        480 
IKYKRDYRSE MIDTVDLVVV GAFHGRGKRA GLYGAFLLAA YDPSTDMFYT VCKVGSGFTD 

       490        500        510        520        530        540 
ADLRRMYDML QPLKIPHRHP RVVSKMQPDV WFVPQVVIEV IGAEITLSPL HTCCIGAVKP 

       550        560        570        580 
GVGLAIRFPR FTGRYRTDKR PEDATTTKEL VEMYQRQKKV PTT
A3MS62 in FASTA format

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