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HAMAP: Staphylococcus epidermidis (strain ATCC 12228) complete proteome

General information

Species:  Staphylococcus epidermidis (strain ATCC 12228)
Species code: STAES
Taxonomy: Bacteria; Firmicutes; Bacillales; Staphylococcus (TaxID: 176280) [NEWT/ NCBI]
Description: Gram-positive nonmotile coccus that grows in aerobic and anaerobic conditions, in which it forms grape-like clusters. S.epidermidis is a common member of the normal florae of skin and mucous membranes. Its large numbers and ubiquitous distribution make it one of the most commonly isolated organisms in the clinical laboratory. It is now one of the most important agents of hospital acquired infections. Immunosuppressed or neutropenic patients are particularly at risk, as are individuals with indwelling catheters or prosthetic devices. S. epidermidis (strain ATCC 12228) is not able to form biofilms.
Properties: Presence of flagella: No
Human pathogen: Yes
Interaction: Animal commensal in Mammalia; Animal pathogen in Mammalia
Number of membranes: 1
Number of inteins:0
Statistics: Number of STAES entries in the UniProt Knowledgebase: 2461 (756 in UniProtKB/Swiss-Prot + 1705 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 12228
Genome structure:
• Chromosome EMBL accession number AE015929 (circular; 2,499,279 bp) (download entry) (download Genome Reviews).
• Plasmid pSE-12228-01 EMBL accession number AE015930 (circular; 4,439 bp) (download entry) (download Genome Reviews).
• Plasmid pSE-12228-02 EMBL accession number AE015931 (circular; 4,679 bp) (download entry) (download Genome Reviews).
• Plasmid pSE-12228-03 EMBL accession number AE015932 (circular; 8,007 bp) (download entry) (download Genome Reviews).
• Plasmid pSE-12228-04 EMBL accession number AE015933 (circular; 17,261 bp) (download entry) (download Genome Reviews).
• Plasmid pSE-12228-05 EMBL accession number AE015934 (circular; 24,365 bp) (download entry) (download Genome Reviews).
• Plasmid pSE-12228-06 EMBL accession number AE015935 (circular; 6,585 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=22832016; PubMed=12950922; [ NCBI , EBI , Israel , Japan ]
Zhang Y.-Q., Ren S.-X., Li H.-L., Wang Y.-X., Fu G., Yang J., Qin Z.-Q., Miao Y.-G., Wang W.-Y., Chen R.-S., Shen Y., Chen Z., Yuan Z.-H., Zhao G.-P., Qu D., Danchin A., Wen Y.-M. ;
"Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).";
Mol. Microbiol. 49:1577-1593(2003).
Web links:
Official genome site(s):
http://www.chgc.sh.cn/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Staphylococcus&GLspecies=epidermidis&GLstrain=ATCC12228
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid176280%5Borgn%5D
GenoList: http://bioinfo.hku.hk/GenoList/index.pl?database=sepilist
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Sepi_ATCC12228
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Staphylococcus_epidermidis.html
NMPDR: http://www.nmpdr.org/FIG/seedviewer.cgi?pattern=176280.1;page=SearchResult
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p279_Sta_epide
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntse02
 EBI Proteome Analysis page



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