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HAMAP: Methanopyrus kandleri complete proteome

General information

Species:  Methanopyrus kandleri
Species code: METKA
Taxonomy: Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus (TaxID: 2320) [NEWT/ NCBI]
Description: Rod-shaped Gram positive methanogen that grows at 80-110 degrees Celsius. It was isolated from the sea floor at the base of a 2000 m-deep "black smoker" chimney in the Gulf of California.
Properties: Presence of flagella: not known
Interaction: No
Number of membranes: 1
Number of inteins: 5 in 5 different sequences
Statistics: Number of METKA entries in the UniProt Knowledgebase: 1687 (367 in UniProtKB/Swiss-Prot + 1320 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    AV19 / DSM 6324 / JCM 9639 / NBRC 100938
Genome structure
Chromosome EMBL accession number AE009439 (circular; 1,694,969 bp) (download entry) (download Genome Reviews).
References
[1] MEDLINE=21927647; PubMed=11930014; [ NCBI , EBI , Israel , Japan ]
Slesarev A.I., Mezhevaya K.V., Makarova K.S., Polushin N.N., Shcherbinina O.V., Shakhova V.V., Belova G.I., Aravind L., Natale D.A., Rogozin I.B., Tatusov R.L., Wolf Y.I., Stetter K.O., Malykh A.G., Koonin E.V., Kozyavkin S.A. ;
"The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.";
Proc. Natl. Acad. Sci. U.S.A. 99:4644-4649(2002).
Web links
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Methanopyrus&GLspecies=kandleri&GLstrain=AV19
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid190192%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Mkan_AV19
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Methanopyrus_kandleri.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p294_Met_kandl
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntmk01
 EBI Proteome Analysis page



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