Search for
You are here: ExPASy KR  > Databases  > Around UniProtKB  > HAMAP

Home Proteomes Families Documents Downloads Links
HAMAP: Methanosarcina barkeri (strain Fusaro / DSM 804) complete proteome

General information

Species:  Methanosarcina barkeri (strain Fusaro / DSM 804)
Species code: METBF
Taxonomy: Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina (TaxID: 269797) [NEWT/ NCBI]
Description: Methanosarcina barkeri is a methanogenic anaerobe Archaeon. The Fusaro strain was isolated from mud samples taken from the freshwater lake Lago del Fusaro near Naples in Italy. It has also been reported that M.barkeri strain Fusaro lives in the rumen of cattle. The rumen is an organ where microbial populations collaborate to digest cellulose and other polysaccharides, producing carbon dioxide, methane and organic acids.
Properties: Presence of flagella: not known
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of METBF entries in the UniProt Knowledgebase: 3616 (329 in UniProtKB/Swiss-Prot + 3287 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Fusaro / DSM 804
Genome structure:
• Chromosome EMBL accession number CP000099 (circular; 4,837,408 bp) (download entry) (download Genome Reviews).
• Plasmid pMbar1 EMBL accession number CP000098 (circular; 36,358 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=16980466; [ NCBI , EBI , Israel , Japan ]
Maeder D.L., Anderson I., Brettin T.S., Bruce D.C., Gilna P., Han C.S., Lapidus A., Metcalf W.W., Saunders E., Tapia R., Sowers K.R. ;
"The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes.";
J. Bacteriol. 188:7922-7931(2006).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/metba/metba.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Methanosarcina&GLspecies=barkeri&GLstrain=fusaro
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid269797%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Mbar_FUSARO
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Methanosarcina_barkeri.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p103_Met_barke
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntmb02
 EBI Proteome Analysis page



Tools