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HAMAP: Methanosarcina acetivorans complete proteome

General information

Species:  Methanosarcina acetivorans
Species code: METAC
Taxonomy: Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina (TaxID: 2214) [NEWT/ NCBI]
Description: Methanosarcina acetivorans is an acetate-utilizing methanogen, that thrives in a broad range of environments, and are unique among the Archaea in forming complex multicellular structures. It has the largest known archaeal genome. Although motility has not been observed in any Methanosarcinae, a flagellin gene cluster and two complete chemotaxis gene clusters were identified.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of METAC entries in the UniProt Knowledgebase: 4467 (465 in UniProtKB/Swiss-Prot + 4002 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 35395 / DSM 2834 / JCM 12185 / C2A
Genome structure:
Chromosome EMBL accession number AE010299 (circular; 5,751,492 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=21929760; PubMed=11932238; [ NCBI , EBI , Israel , Japan ]
Galagan J.E., Nusbaum C., Roy A., Endrizzi M.G., Macdonald P., FitzHugh W., Calvo S., Engels R., Smirnov S., Atnoor D., Brown A., Allen N., Naylor J., Stange-Thomann N., DeArellano K., Johnson R., Linton L., McEwan P., McKernan K., Talamas J., Tirrell A., Ye W., Zimmer A., Barber R.D., Cann I., Graham D.E., Grahame D.A., Guss A.M., Hedderich R., Ingram-Smith C., Kuettner H.C., Krzycki J.A., Leigh J.A., Li W., Liu J., Mukhopadhyay B., Reeve J.N., Smith K., Springer T.A., Umayam L.A., White O., White R.H., de Macario E.C., Ferry J.G., Jarrell K.F., Jing H., Macario A.J.L., Paulsen I.T., Pritchett M., Sowers K.R., Swanson R.V., Zinder S.H., Lander E., Metcalf W.W., Birren B. ;
"The genome of Methanosarcina acetivorans reveals extensive metabolic and physiological diversity.";
Genome Res. 12:532-542(2002).
Web links:
Official genome site(s):
http://www-genome.wi.mit.edu/annotation/microbes/methanosarcina/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Methanosarcina&GLspecies=acetivorans&GLstrain=C2A
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid188937%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Mace_C2A
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Methanosarcina_acetivorans.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p290_Met_aceti
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntma02
 EBI Proteome Analysis page



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