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HAMAP: Dehalococcoides sp. (strain CBDB1) complete proteome

General information

Species:  Dehalococcoides sp. (strain CBDB1)
Species code: DEHSC
Taxonomy: Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides (TaxID: 255470) [NEWT/ NCBI]
Description: Dehalococcoides species are strictly aerobic bacteria that catabolize several of the most toxic and persistent chlorinated aromatics and aliphatics by reductive dechlorination and are used for in situ bioremedation of contaminated sites. Dehalococcoides (strain CBDB1) is able to dechlorine 1,2,3-trichlorobenzene, 1,2,4-trichlorobenzene, 2,3-dichloro-p-dibenzodioxin and the "Seveso toxin" 2,3,7,8-tetrachloro-p-dibenzodioxin. It has 32 genes homologous to reductive dehalogenases.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of DEHSC entries in the UniProt Knowledgebase: 1454 (238 in UniProtKB/Swiss-Prot + 1216 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    CBDB1
Genome structure:
Chromosome EMBL accession number AJ965256 (circular; 1,395,502 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=16116419; [ NCBI , EBI , Israel , Japan ]
Kube M., Beck A., Zinder S.H., Kuhl H., Reinhardt R., Adrian L. ;
"Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1.";
Nat. Biotechnol. 23:1269-1273(2005).
Web links:
Official genome site(s):
http://www.micro-genomes.mpg.de/cbdb1/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Dehalococcoides&GLspecies=species&GLstrain=CBDB1
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid255470%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Deha_CBDB1
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Dehalococcoides.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p15604_Deh_CBDB1
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntdc01
 EBI Proteome Analysis page



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