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How to create HTML links to services on ExPASy

ExPASy molecular biology server http://www.expasy.org/
ExPASy FTP server ftp://ftp.expasy.org/

Databases
UniProt Knowledgebase http://www.expasy.org/sprot/
to a specific UniProt Knowledgebase (Swiss-Prot or TrEMBL) entry http://www.expasy.org/uniprot/accession number(AC) or entry name, example: http://www.expasy.org/uniprot/P01308
to a UniProt Knowledgebase entry in raw text format http://www.expasy.org/uniprot/accession number(AC) or entry name, example: http://www.expasy.org/uniprot/P01308.txt
to a UniProt Knowledgebase entry in fasta format http://www.expasy.org/uniprot/accession number(AC) or entry name, example: http://www.expasy.org/uniprot/P01308.fas

Create your own link to a specific UniProt Knowledgebase data set, corresponding to your criteria for protein name, gene name and/or organism http://www.expasy.org/sprot/sprot-search.html
to a UniProtKB/Swiss-Prot query by keyword http://www.expasy.org/cgi-bin/get-entries?KW=keyword, example: http://www.expasy.org/cgi-bin/get-entries?KW=Calcium%20channel
to a UniProtKB query by keyword http://www.expasy.org/cgi-bin/get-entries?KW=keyword&db=sp&db=tr, example: http://www.expasy.org/cgi-bin/get-entries?KW=Calcium%20channel&db=sp&db=tr
to a UniProtKB/Swiss-Prot query by author name http://www.expasy.org/cgi-bin/get-entries?RA=author name, example: http://www.expasy.org/cgi-bin/get-entries?RA=Kaufman%20J.
to a UniProtKB query by author name http://www.expasy.org/cgi-bin/get-entries?RA=author name&db=sp&db=tr, example: http://www.expasy.org/cgi-bin/get-entries?RA=Kaufman%20J.&db=sp&db=tr
to a UniProtKB query by protein_id http://www.expasy.org/cgi-bin/get-entries?DR=protein_id, example: http://www.expasy.org/cgi-bin/get-entries?DR=CAA32536
to the results (computed on the fly) of a BLAST similarity search of a UniProtKB entry against UniProtKB http://www.expasy.org/cgi-bin/blast.pl?sequence=accession number(AC), example: http://www.expasy.org/cgi-bin/blast.pl?sequence=P04406
to a random UniProtKB/Swiss-Prot entry http://www.expasy.org/cgi-bin/get-random-entry.pl?S
to a random UniProtKB/TrEMBL entry http://www.expasy.org/cgi-bin/get-random-entry.pl?T
to a random UniProtKB entry http://www.expasy.org/cgi-bin/get-random-entry.pl?ST
retrieving a list of UniProtKB entries http://www.expasy.org/sprot/sprot-retrieve-list.html
Swiss-Prot documentation page http://www.expasy.org/sprot/sp-docu.html
Swiss-Shop http://www.expasy.org/swiss-shop/
FTP: Swiss-Prot ftp://ftp.expasy.org/databases/swiss-prot/
FTP: UniProt Knowledgebase (Swiss-Prot + TrEMBL) ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/
PROSITE http://www.expasy.org/prosite/
to a specific PROSITE documentation entry http://www.expasy.org/cgi-bin/get-prodoc-entry?PDOC????? , example: http://www.expasy.org/cgi-bin/get-prodoc-entry?PDOC00314
to the user-friendly NiceSite View of a PROSITE documentation entry http://www.expasy.org/prosite/PDOC?????, example: http://www.expasy.org/prosite/PDOC00314
to a specific PROSITE pattern or profile entry http://www.expasy.org/cgi-bin/get-prosite-entry?PS????? , example: http://www.expasy.org/cgi-bin/get-prosite-entry?PS00365
to the user-friendly NiceSite View of a PROSITE entry http://www.expasy.org/prosite/PS?????, example: http://www.expasy.org/prosite/PS00365
FTP ftp://ftp.expasy.org/databases/prosite/
HAMAP http://www.expasy.org/sprot/hamap/
to a specific HAMAP family rule http://www.expasy.org/unirules/MF_????? , example: http://www.expasy.org/unirules/MF_00163
to the description of an complete microbial genome http://www.expasy.org/sprot/hamap/organism-code.html, example: http://www.expasy.org/sprot/hamap/ECOLI.html
SWISS-2DPAGE http://www.expasy.org/ch2d/
to a specific SWISS-2DPAGE protein entry http://www.expasy.org/swiss-2dpage/accession number(AC) or entry name, example: http://www.expasy.org/swiss-2dpage/P01009
to a SWISS-2DPAGE protein entry in raw text format http://www.expasy.org/swiss-2dpage/format=raw&extract&ac=accession number(AC) or entry name, example: http://www.expasy.org/swiss-2dpage/format=raw&extract&ac=P01009
to a specific SWISS-2DPAGE spot http://www.expasy.org/swiss-2dpage/spot=SWISS-2DPAGE spot serial number, example: http://www.expasy.org/swiss-2dpage/spot=2D-0017PD
to retrieve the protein list identified on a SWISS-2DPAGE reference map http://www.expasy.org/swiss-2dpage/map=reference map name, example: http://www.expasy.org/swiss-2dpage/map=LIVER_HUMAN
to the graphical interface of a specific SWISS-2DPAGE reference map http://www.expasy.org/swiss-2dpage/viewer&ac=all&map=reference map name, example: http://www.expasy.org/swiss-2dpage/viewer&ac=all&map=LIVER_HUMAN
FTP ftp://ftp.expasy.org/databases/swiss-2dpage/
SWISS-MODEL Repository http://swissmodel.expasy.org/repository/
ENZYME http://www.expasy.org/enzyme/
to a specific ENZYME entry or an ENZYME class http://www.expasy.org/enzyme/EC number, examples:
http://www.expasy.org/enzyme/1.1.1.3
http://www.expasy.org/enzyme/1.1.-.-
to a specific ENZYME entry in raw text format http://www.expasy.org/enzyme/EC number.txt, example:
http://www.expasy.org/enzyme/1.1.1.3.txt
SRS (Sequence Retrieval System) http://www.expasy.org/srs5/

For links to SRS queries / query results, consult the SRS document 'Making html links to SRS'

Tools and software packages
The ExPASy Proteomics Tools http://www.expasy.org/tools/
Protein identification and characterization
AACompIdent http://www.expasy.org/tools/aacomp/
AACompSim http://www.expasy.org/tools/aacsim/
MultiIdent http://www.expasy.org/tools/multiident/
Aldente http://www.expasy.org/tools/aldente/
TagIdent http://www.expasy.org/tools/tagident.html
FindMod http://www.expasy.org/tools/findmod/
GlycoMod http://www.expasy.org/tools/glycomod/
FindPept http://www.expasy.org/tools/findpept.html
PeptideMass http://www.expasy.org/tools/peptide-mass.html
PeptideCutter http://www.expasy.org/tools/peptidecutter/
Compute pI/Mw http://www.expasy.org/tools/pi_tool.html
Pattern and profile searches
ScanProsite http://www.expasy.org/tools/scanprosite/
Primary structure analysis
ProtParam http://www.expasy.org/tools/protparam.html
ProtScale http://www.expasy.org/tools/protscale.html
Tertiary structure
Swiss-PdbViewer http://www.expasy.org/spdbv/mainpage.html
SWISS-MODEL http://www.expasy.org/swissmod/SWISS-MODEL.html
Post-translational modification prediction
Myristoylator http://www.expasy.org/tools/myristoylator/
The Sulfinator http://www.expasy.org/tools/sulfinator/
Alignment
SIM http://www.expasy.org/tools/sim-prot.html
LALNVIEW http://www.expasy.org/tools/lalnview.html
Other tools
ImageMaster / Melanie http://www.expasy.org/melanie/
Make2ddb http://www.expasy.org/ch2d/make2ddb.html
Biochemical Pathways http://www.expasy.org/tools/pathways/
Translate http://www.expasy.org/tools/dna.html
RandSeq http://www.expasy.org/tools/randseq.html

Links to other molecular biology resources
ExPASy's Life Sciences Directory http://www.expasy.org/links.html
BioHunt http://www.expasy.org/BioHunt/
ExpasyIndex http://www.expasy.org/ExpasyHunt/
2DHunt http://www.expasy.org/ch2d/2DHunt/
WORLD-2DPAGE List http://www.expasy.org/ch2d/2d-index.html
World-2DPAGE Portal http://www.expasy.org/world-2dpage/

Documentation
What's New on ExPASy http://www.expasy.org/history.html
ExPASy sitemap http://www.expasy.org/sitemap.html
SWISS-FLASH electronic bulletins http://www.expasy.org/swiss-flash/
Complete table of available documents http://www.expasy.org/doc.html

Miscellaneous
Swiss-Quiz http://www.expasy.org/swiss-quiz/
Swiss-Jokes http://www.expasy.org/cgi-bin/sw-jokes.pl

Last modified 09/Oct/2006 by CHH

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